Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00284 ATGCTGCTGCAATTTTCAGACCCAGCCAAGCTTAAAACCAAGATGTGTGTGTTTGAGGACAAATTCCTTGCACGTGATTCTGGTACACTTGAACAACTGAAGGAGATGACTTCTAGGCGTAGAGTCATTGAGGAGTCCATTAATGAAACTAGCTCTATCACAGATGCCATTGCAAGAGAAATGTCTGGCGGGTTGTCTTCTCACACTCAACAGGTTGATCTGGCCGGCTATAACCTCAGGATTGTTCAGTGGACTTCAGACCTAAAGATACGATGGTCAAGTGCTCTGAGCTCATCTTCATTATTTCATCTTAGGGGTCCAAAATTTTTCCAAATAGATAACTTGAGGTTTGAGGTAGGGATGACTCTTTCTCTATATGGCGCTGTTCTTAGGCAGAGGGCATTAGAAGTTATATCAGAAGATCAAGTGCAATCTGCGACCTTTTTCAGAGAAGCTGCCGGGGTTTATCAATATCTAGCTAAGGAGATTCTTCCAGCCATTCAACACTGCCTGCCTTCTGACAGGCCACCAGAAGTTATTCCATCTACTTCGGCTGCGATGAGTCTTGTTTGTTTAGCTGAGGCTCAGGCTGTCACATCAATGAGGGCCGAAGAAAAGGGAACTATTCCCAGTCTTTTGGCAAAGCTACACTATGGTATTGTTGAATTACTCAATGAATCAGCTAATCATTTACGCATAATTTCAGGAGAATGTAAAGATATTTCCTCAAACTTTCTGGAATTTCTATCAGCCTTCAGAGCTCTACATGAGTTGAAGAGTCGGAAAAATCTTGCAAAAGAACTGATGTCTGGTGGCCAAGCTGGAGTTGCTATAGGAGTTCTTAGATATGCATTAACTGATGTCAAAAAGGAAATGCCAAGAGAAAATTCATGGAAACTTGTTTTCGGAATAGAAATAGATATTGCAGCCGAAATGCTAAGGAAGTTCGAACGCGAGAATGAAATCGTATGGCATAAGAAAATCCCTTCAAGAGATGAGTTGCCAACACCTAAGAGTACCCAAATTGTCAAATCCATACCTTATCATCCCCAAAAATGGGAGAGAGAGCTAGCTTTTAAAATATGA 1086 41.53 MLLQFSDPAKLKTKMCVFEDKFLARDSGTLEQLKEMTSRRRVIEESINETSSITDAIAREMSGGLSSHTQQVDLAGYNLRIVQWTSDLKIRWSSALSSSSLFHLRGPKFFQIDNLRFEVGMTLSLYGAVLRQRALEVISEDQVQSATFFREAAGVYQYLAKEILPAIQHCLPSDRPPEVIPSTSAAMSLVCLAEAQAVTSMRAEEKGTIPSLLAKLHYGIVELLNESANHLRIISGECKDISSNFLEFLSAFRALHELKSRKNLAKELMSGGQAGVAIGVLRYALTDVKKEMPRENSWKLVFGIEIDIAAEMLRKFERENEIVWHKKIPSRDELPTPKSTQIVKSIPYHPQKWERELAFKI 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2845267 2848430 + Lsi04G002840.1 Lsi04g00284 660333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00284 361 PANTHER PCD6 INTERACTING PROTEIN-RELATED 1 361 IPR045251 GO:0071985
Lsi04g00284 361 Gene3D alix/aip1 like domains 5 360 IPR038499 -
Lsi04g00284 361 SMART BRO1_2 21 357 IPR004328 -
Lsi04g00284 361 PANTHER BRO1 DOMAIN-CONTAINING PROTEIN BROX 1 361 - -
Lsi04g00284 361 Pfam BRO1-like domain 87 349 IPR004328 -
Lsi04g00284 361 CDD BRO1_Alix_like_2 7 350 - -
Lsi04g00284 361 ProSiteProfiles BRO1 domain profile. 92 361 IPR004328 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00284 - - - csv:101214130 639.417
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g272 Blo01g00490 . Bda01g02089 . . . . . . Cmo18g01057 . Cma18g01039 . Car18g00965 . Cpe09g00278 . Bhi07g01365 . . Lac13g0463 . . . Cla05g02325 Cam05g2498 Cec05g2522 Cco05g2564 Clacu05g2492 Cmu05g2355 Cre05g2471 Cone13ag0851 . . Cone9ag0475 Lsi04g00284 Csa05g02585 Chy10g01120 Cme10g00286 . . . . . Bpe02g02280 Bma01g00159 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011876 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00284 Lsi_Chr04 FPKM 0.697114 0.574935 0.982378 0.561392 1.912651 1.636127 1.334552 1.038111 0.950266 0.971969