Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00286 ATGGATTTCGTTGATAATTTTCTGGATATTCGAGTGGGGATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGCAAAATTCAGGTATTCCAGCGAGAACTTCCTCTCTGTTTGGAGCTTGTCACCAGAGCTATTGATTCTTGCCGGCAGCAGTTATCTGGGGTGTCGACAGAGAGCTCTGAACATACTTCAAGCGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAACAAAGCTTCAGTGAATTCCCATTTTGAGATTGAAGAAGATGAACAATCAAAACCAGACAAAAATGAATTGGGTCGATCTGATTGGCTTAAATCGGCTCAGCTTTGGAATCAATCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTTTTCGGTTGTTGAAGTAAAAAAGAACGGCGGTGGCGGTGCTTTTCAACCATTTCAGAAGGAGAAAACAGCTCCATTGAAAACAGAGCCGTCGGTGGTCGTCGGTAAATCGGACGGTTCTTCTCCAATTCCGGAGGCGACGACGAGTTCAACAACAGAAACCGCCTCCAAAAGTGGCGGCGGAACCAGTAAACGTGAAGATAAGGAGTCTCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCCGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGAGGTCCTCATGTTGCTACACCGAAACAAATCAGAGAGTTAATGAAGGTCGATGGACTTACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACCAATTCTGCAATGCAAGACAGCGGCAGTTCATCGGCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTGCCGCCACCGCCTCCACCGAAATACACGGTGTCAACGACAGCGAAAGCGAGAAATGGGATTTATGCTCCGGTGGCAACGGCGGTGCGACGGCAGACGACGGCAGAGGAAGGCAAGGCGAGCCACAGCGGGGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTGCACCCACACCACCACAACCTCGCCGTCGGCGGCGTAG 1077 50.32 MDFVDNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDGPVLEEFIPINKASVNSHFEIEEDEQSKPDKNELGRSDWLKSAQLWNQSPDPPVTEDVAKETTFSVVEVKKNGGGGAFQPFQKEKTAPLKTEPSVVVGKSDGSSPIPEATTSSTTETASKSGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVSTTAKARNGIYAPVATAVRRQTTAEEGKASHSGGVVHSNSPATSSCTHTTTTSPSAA 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2865253 2867244 - Lsi04G002860.1 Lsi04g00286 660335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00286 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 352 IPR044787 GO:0003700|GO:0006355
Lsi04g00286 358 MobiDBLite consensus disorder prediction 334 358 - -
Lsi04g00286 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 264 IPR017930 -
Lsi04g00286 358 MobiDBLite consensus disorder prediction 173 191 - -
Lsi04g00286 358 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Lsi04g00286 358 MobiDBLite consensus disorder prediction 192 212 - -
Lsi04g00286 358 Coils Coil 16 36 - -
Lsi04g00286 358 Gene3D - 206 263 - -
Lsi04g00286 358 MobiDBLite consensus disorder prediction 140 212 - -
Lsi04g00286 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 262 IPR006447 GO:0003677
Lsi04g00286 358 MobiDBLite consensus disorder prediction 319 358 - -
Lsi04g00286 358 PANTHER TRANSCRIPTION FACTOR HHO2 15 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00286 Lsi-Chr4:2865253 Lsi08g00393 Lsi-Chr8:10882331 5.84E-105 dispersed
Lsi04g00286 Lsi-Chr4:2865253 Lsi11g00287 Lsi-Chr11:2986019 2.53E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25117 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00286 - - csv:101203539 524.242