Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00286 ATGGATTTCGTTGATAATTTTCTGGATATTCGAGTGGGGATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGCAAAATTCAGGTATTCCAGCGAGAACTTCCTCTCTGTTTGGAGCTTGTCACCAGAGCTATTGATTCTTGCCGGCAGCAGTTATCTGGGGTGTCGACAGAGAGCTCTGAACATACTTCAAGCGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAACAAAGCTTCAGTGAATTCCCATTTTGAGATTGAAGAAGATGAACAATCAAAACCAGACAAAAATGAATTGGGTCGATCTGATTGGCTTAAATCGGCTCAGCTTTGGAATCAATCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTTTTCGGTTGTTGAAGTAAAAAAGAACGGCGGTGGCGGTGCTTTTCAACCATTTCAGAAGGAGAAAACAGCTCCATTGAAAACAGAGCCGTCGGTGGTCGTCGGTAAATCGGACGGTTCTTCTCCAATTCCGGAGGCGACGACGAGTTCAACAACAGAAACCGCCTCCAAAAGTGGCGGCGGAACCAGTAAACGTGAAGATAAGGAGTCTCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCCGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGAGGTCCTCATGTTGCTACACCGAAACAAATCAGAGAGTTAATGAAGGTCGATGGACTTACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACCAATTCTGCAATGCAAGACAGCGGCAGTTCATCGGCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTGCCGCCACCGCCTCCACCGAAATACACGGTGTCAACGACAGCGAAAGCGAGAAATGGGATTTATGCTCCGGTGGCAACGGCGGTGCGACGGCAGACGACGGCAGAGGAAGGCAAGGCGAGCCACAGCGGGGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTGCACCCACACCACCACAACCTCGCCGTCGGCGGCGTAG 1077 50.32 MDFVDNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDGPVLEEFIPINKASVNSHFEIEEDEQSKPDKNELGRSDWLKSAQLWNQSPDPPVTEDVAKETTFSVVEVKKNGGGGAFQPFQKEKTAPLKTEPSVVVGKSDGSSPIPEATTSSTTETASKSGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVSTTAKARNGIYAPVATAVRRQTTAEEGKASHSGGVVHSNSPATSSCTHTTTTSPSAA 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2865253 2867244 - Lsi04G002860.1 Lsi04g00286 660335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00286 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 352 IPR044787 GO:0003700|GO:0006355
Lsi04g00286 358 MobiDBLite consensus disorder prediction 334 358 - -
Lsi04g00286 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 264 IPR017930 -
Lsi04g00286 358 MobiDBLite consensus disorder prediction 173 191 - -
Lsi04g00286 358 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Lsi04g00286 358 MobiDBLite consensus disorder prediction 192 212 - -
Lsi04g00286 358 Coils Coil 16 36 - -
Lsi04g00286 358 Gene3D - 206 263 - -
Lsi04g00286 358 MobiDBLite consensus disorder prediction 140 212 - -
Lsi04g00286 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 262 IPR006447 GO:0003677
Lsi04g00286 358 MobiDBLite consensus disorder prediction 319 358 - -
Lsi04g00286 358 PANTHER TRANSCRIPTION FACTOR HHO2 15 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00286 - - - csv:101203539 524.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00286 Lsi-Chr4:2865253 Lsi08g00393 Lsi-Chr8:10882331 5.84E-105 dispersed
Lsi04g00286 Lsi-Chr4:2865253 Lsi11g00287 Lsi-Chr11:2986019 2.53E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi04g00286 . 19 257 G2-like Transcription Factor Family AT1G25550 54.9 6.3e-54 208.0
Lsi08g00393 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 3.8e-51 198.7
Lsi02g01341 . 1 269 G2-like Transcription Factor Family AT3G46640 52.2 1.5e-62 236.9
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT5G05090 55.6 7.9e-70 260.8
Lsi05g01838 . 7 314 G2-like Transcription Factor Family AT4G13640 53.6 6.1e-55 211.5
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi11g01586 . 1 387 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-81 299.7
Lsi10g01509 . 1 166 G2-like Transcription Factor Family AT1G79430 71.0 3.1e-61 232.6
Lsi03g01290 . 70 292 G2-like Transcription Factor Family AT5G18240 53.3 6.4e-50 194.9
Lsi01g00520 . 84 343 G2-like Transcription Factor Family AT2G01060 56.8 2.5e-51 199.1
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT3G10760 56.9 5.6e-81 298.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25117 None None None None Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00286 Lsi_Chr04 FPKM 0.089864 0.0 2.03546 0.976791 0.091508 0.294838 0.149738 0.188711 0.343017 0.11969