Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00288 | ATGGACGGAATTTGCATTGACGAAAGCACTTCCACTGAATCTCAATCCCCGGTGGCTAAATCTCCGCCGCCGGAGACCAGTCTTTGCCGCGTCGGGAGTGGCGTCACTAGTGTAGTTCTCGATTCGGACTCCAGCGGCGGCGGAGTTGAGGCAGAGTCCCGGAAACTACCGTCGTCTCGTTTCAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCGTACGATGTGGCTGCCCAACGTTTCCGTGGCCGTGACGCCGTTACCAATTTCAAACCTTTATCACACCCTGGTGAAGAAGACGACGTCGTTTCCGCTTTCCTCAACTCCCATTCCAAGGCTGAGATCGTCGACATGCTACGTAAGCACACTTACTTAGACGAACTTCACCAAAGTAGACGAAACGCCGGGTTATACGGTTCGGATCGGAAACGAAACCGTTCATTATCCGGTTCGGATACTGACCCGGAAACCGCTCGTGAACTTCTATTCGAAAAAGCCGTTACTCCAAGCGATGTGGGAAAATTGAACCGTTTAGTCATACCAAAACAACACGCTGAAAAAAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTCTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCCTGAAATCGACCGGACAAGATAAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGGCTTCTACTACAACCGGGTCGGACATGAACCCGGTTCAGACCTTCAGACTATTTGGAGTTGACATTATCAAAGTGTCGCCAAGTAGTGGGTGTAGTGAGAAGAGGAGGAGAGAATTGGAATTTCTCGCTTTGCAATGTACCAAAAAACAAAGGATTGTCGGAGCATTGTAA | 1053 | 49.38 | MDGICIDESTSTESQSPVAKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSHPGEEDDVVSAFLNSHSKAEIVDMLRKHTYLDELHQSRRNAGLYGSDRKRNRSLSGSDTDPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKDKQLYIEWKARKASTTTGSDMNPVQTFRLFGVDIIKVSPSSGCSEKRRRELEFLALQCTKKQRIVGAL | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2883210 | 2884262 | - | Lsi04G002880.1 | Lsi04g00288 | 660337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00288 | 350 | Pfam | B3 DNA binding domain | 187 | 290 | IPR003340 | GO:0003677 | |
Lsi04g00288 | 350 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Lsi04g00288 | 350 | ProSiteProfiles | AP2/ERF domain profile. | 60 | 115 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi04g00288 | 350 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 1 | 350 | IPR044800 | GO:0003700 | |
Lsi04g00288 | 350 | SMART | rav1_2 | 60 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi04g00288 | 350 | MobiDBLite | consensus disorder prediction | 160 | 174 | - | - | |
Lsi04g00288 | 350 | Gene3D | - | 174 | 304 | IPR015300 | - | |
Lsi04g00288 | 350 | CDD | B3_DNA | 186 | 274 | IPR003340 | GO:0003677 | |
Lsi04g00288 | 350 | Gene3D | AP2/ERF domain | 59 | 116 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi04g00288 | 350 | SUPERFAMILY | DNA-binding domain | 59 | 115 | IPR016177 | GO:0003677 | |
Lsi04g00288 | 350 | CDD | AP2 | 59 | 114 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi04g00288 | 350 | Pfam | AP2 domain | 60 | 107 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi04g00288 | 350 | MobiDBLite | consensus disorder prediction | 160 | 180 | - | - | |
Lsi04g00288 | 350 | MobiDBLite | consensus disorder prediction | 7 | 22 | - | - | |
Lsi04g00288 | 350 | ProSiteProfiles | B3 DNA-binding domain profile. | 187 | 294 | IPR003340 | GO:0003677 | |
Lsi04g00288 | 350 | SUPERFAMILY | DNA-binding pseudobarrel domain | 185 | 276 | IPR015300 | - | |
Lsi04g00288 | 350 | SMART | B3_2 | 187 | 294 | IPR003340 | GO:0003677 | |
Lsi04g00288 | 350 | PANTHER | PROTEIN RAV1, PUTATIVE-RELATED | 1 | 350 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00288 | Lsi-Chr4:2883210 | Lsi09g01022 | Lsi-Chr9:14369298 | 2.06E-134 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25118 | PF02362 | B3 | 1.40E-27 | CL0405 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00288 | K09287 | - | csv:101203784 | 628.246 |