Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00288 ATGGACGGAATTTGCATTGACGAAAGCACTTCCACTGAATCTCAATCCCCGGTGGCTAAATCTCCGCCGCCGGAGACCAGTCTTTGCCGCGTCGGGAGTGGCGTCACTAGTGTAGTTCTCGATTCGGACTCCAGCGGCGGCGGAGTTGAGGCAGAGTCCCGGAAACTACCGTCGTCTCGTTTCAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCGTACGATGTGGCTGCCCAACGTTTCCGTGGCCGTGACGCCGTTACCAATTTCAAACCTTTATCACACCCTGGTGAAGAAGACGACGTCGTTTCCGCTTTCCTCAACTCCCATTCCAAGGCTGAGATCGTCGACATGCTACGTAAGCACACTTACTTAGACGAACTTCACCAAAGTAGACGAAACGCCGGGTTATACGGTTCGGATCGGAAACGAAACCGTTCATTATCCGGTTCGGATACTGACCCGGAAACCGCTCGTGAACTTCTATTCGAAAAAGCCGTTACTCCAAGCGATGTGGGAAAATTGAACCGTTTAGTCATACCAAAACAACACGCTGAAAAAAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTCTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCCTGAAATCGACCGGACAAGATAAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGGCTTCTACTACAACCGGGTCGGACATGAACCCGGTTCAGACCTTCAGACTATTTGGAGTTGACATTATCAAAGTGTCGCCAAGTAGTGGGTGTAGTGAGAAGAGGAGGAGAGAATTGGAATTTCTCGCTTTGCAATGTACCAAAAAACAAAGGATTGTCGGAGCATTGTAA 1053 49.38 MDGICIDESTSTESQSPVAKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSHPGEEDDVVSAFLNSHSKAEIVDMLRKHTYLDELHQSRRNAGLYGSDRKRNRSLSGSDTDPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKDKQLYIEWKARKASTTTGSDMNPVQTFRLFGVDIIKVSPSSGCSEKRRRELEFLALQCTKKQRIVGAL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2883210 2884262 - Lsi04G002880.1 Lsi04g00288 660337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00288 350 Pfam B3 DNA binding domain 187 290 IPR003340 GO:0003677
Lsi04g00288 350 MobiDBLite consensus disorder prediction 1 30 - -
Lsi04g00288 350 ProSiteProfiles AP2/ERF domain profile. 60 115 IPR001471 GO:0003700|GO:0006355
Lsi04g00288 350 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 350 IPR044800 GO:0003700
Lsi04g00288 350 SMART rav1_2 60 121 IPR001471 GO:0003700|GO:0006355
Lsi04g00288 350 MobiDBLite consensus disorder prediction 160 174 - -
Lsi04g00288 350 Gene3D - 174 304 IPR015300 -
Lsi04g00288 350 CDD B3_DNA 186 274 IPR003340 GO:0003677
Lsi04g00288 350 Gene3D AP2/ERF domain 59 116 IPR036955 GO:0003700|GO:0006355
Lsi04g00288 350 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677
Lsi04g00288 350 CDD AP2 59 114 IPR001471 GO:0003700|GO:0006355
Lsi04g00288 350 Pfam AP2 domain 60 107 IPR001471 GO:0003700|GO:0006355
Lsi04g00288 350 MobiDBLite consensus disorder prediction 160 180 - -
Lsi04g00288 350 MobiDBLite consensus disorder prediction 7 22 - -
Lsi04g00288 350 ProSiteProfiles B3 DNA-binding domain profile. 187 294 IPR003340 GO:0003677
Lsi04g00288 350 SUPERFAMILY DNA-binding pseudobarrel domain 185 276 IPR015300 -
Lsi04g00288 350 SMART B3_2 187 294 IPR003340 GO:0003677
Lsi04g00288 350 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 1 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00288 Lsi-Chr4:2883210 Lsi09g01022 Lsi-Chr9:14369298 2.06E-134 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25118 PF02362 B3 1.40E-27 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00288 K09287 - csv:101203784 628.246