Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00290 ATGGCCTTTAATAAAACTACTATTTTTCCATTTAAAGGTTTCAATTCCACTTGGTTGCTGGAAACAACTAATTTTACTCAAGTCTGGCACCCATTGAAAAAGGATGTCACCTATTGTTCCAATCGTTATGTTGTTATGCATAATCTGTTCTCTATTTTTAATGAGTCTGCTTATTATCAGGTTCCACCTGAATTTGAGAAGTCAGACAAACACGATATGATTAAGCCAGATGGTTGCTCTGATGAAGTGATTGACGATAATGACAATGACATCGAGGAAGAACCGAAATGGTGGGAAGGAGAGTCACAGAACATATTGGACTCCCAACAACTTGTGGAAGCATTGTCTCTCTGTGATGATCTCCTTCAGAGCCAGTCTCCCCCTAGGGATGGGAATTCTAACCACGGCGCATCGAGCAGCAAGTCTTGCTTTGCTGAATATGCAAAATTAGGACCAGAGGATCTTAAGAAGGATCTGGAAGAGTGCCAAAATCTTGTCCTTGATCCTGCAAACATCGAACTCGACACACCTCCAGAGTTCCGACTTAGCCAACTTGATTTCGGTTCGCAAGAAAGCTTCTTGGCTTGGGGTGGTAAGGCAGCAGAGTAA 609 42.36 MAFNKTTIFPFKGFNSTWLLETTNFTQVWHPLKKDVTYCSNRYVVMHNLFSIFNESAYYQVPPEFEKSDKHDMIKPDGCSDEVIDDNDNDIEEEPKWWEGESQNILDSQQLVEALSLCDDLLQSQSPPRDGNSNHGASSSKSCFAEYAKLGPEDLKKDLEECQNLVLDPANIELDTPPEFRLSQLDFGSQESFLAWGGKAAE 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2929765 2931052 - Lsi04G002900.1 Lsi04g00290 660339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00290 202 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 51 197 - -
Lsi04g00290 202 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 51 197 IPR044799 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00290 - - - csv:101214373 259.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00290 Lsi-Chr4:2929765 Lsi02g01599 Lsi-Chr2:21857079 2.00E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g260 . Blo16g01052 . . Bpe13g01330 . . . . Cmo18g01062 . Cma18g01044 . Car18g00969 Sed06g1864 Cpe09g00274 . Bhi07g01372 Tan04g0899 Cmetu10g1098 Lac13g0457 Hepe01g1222 . . Cla05g02330 Cam05g2504 Cec05g2527 Cco05g2570 Clacu05g2498 Cmu05g2360 Cre05g2476 Cone13ag0857 Cone19ag0857 Cone6ag0471 Cone9ag0484 Lsi04g00290 Csa05g02579 Chy10g01115 Cme10g00292 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004444 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 2 1 2 2 5 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00290 Lsi_Chr04 FPKM 2.13972 2.079393 2.026431 1.46595 4.477362 3.289884 3.704093 2.610313 2.164412 1.868996