Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00293 ATGTGTGGGGAGGATCAAGAAGAGGATCATCAGCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAACTTCTTCTCCACCAACAACAACAACAGCTACAAAACAACAACAACACTGATCATCATATGATGTATGGAGGAGATCATCTTCATCATCATGGAATTGGAAGATCAGGGTTAATTTTTCCACCCGAAATCGTGTCGCCGATGCTGCAACCGTGGTCGTCGCTTAACCCGTTCATGATCCCTCCGCCACCGCCACCACCTCCGCCAACATCATTATCATGTTCATCATCATCCTATGGTAATTTGTTTAACCGAAGACCACCTAATTGTCTTCAATTTGCTTATGATGGTCCATCTTCGGCGGACCACCTAGGTCGAATCATATCGACCACGCTCGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAGCTTGGGAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCTAAGCTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCGTCGTTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAGTAATATTGGATCATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGATCTTCTCCCTGATCTCATTAAAACTCTCAAATCCTTACGTTTAACAACTCTTAAAGCTGAAATCACAACACTTGGTGGTCGTTTAAGAAATGTTTTGTTTGTCACTGCTGACGAAGAACAACAACAACAACAAAATATTACCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACCACCACTACAAATAATATTAATATCCTTTAA 1086 41.16 MCGEDQEEDHQQGECSQTIENMFQEQLLLHQQQQQLQNNNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIVSPMLQPWSSLNPFMIPPPPPPPPPTSLSCSSSSYGNLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISSNIGSSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQQNITSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2946974 2950826 - Lsi04G002930.1 Lsi04g00293 660342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00293 361 Pfam Helix-loop-helix DNA-binding domain 173 219 IPR011598 GO:0046983
Lsi04g00293 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Lsi04g00293 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 225 IPR036638 GO:0046983
Lsi04g00293 361 Gene3D - 165 226 IPR036638 GO:0046983
Lsi04g00293 361 PANTHER TRANSCRIPTION FACTOR BHLH30 71 358 - -
Lsi04g00293 361 CDD bHLH_AtAIG1_like 165 242 - -
Lsi04g00293 361 PANTHER TRANSCRIPTION FACTOR BHLH30 71 358 IPR045847 GO:0003700|GO:0006355
Lsi04g00293 361 SMART finulus 176 225 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00300 Lsi-Chr3:3637466 Lsi04g00293 Lsi-Chr4:2946974 3.48E-30 dispersed
Lsi04g00293 Lsi-Chr4:2946974 Lsi09g01016 Lsi-Chr9:14014301 4.67E-93 dispersed
Lsi04g00293 Lsi-Chr4:2946974 Lsi02g00800 Lsi-Chr2:7392591 6.81E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25120 PF00010 HLH 5.70E-13 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00293 - - csv:101214615 548.125