Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00294 ATGCTTGCTTCTTCTAACACAAATCAAATCTCTTCATTTCCATTTATGAATCAAAGTACTTCAATTGAGAAGTCCATCCAAATCCATGATGAAAATCATGATCAAAACCACCCACCATCCTTACAACTCATAGATTGCTACAACTACAACTTCAACCCTTTTCTTGATGATCATCAAGAATTCATTTTGGGGCACATTTTGTATTCTCAAAAACAGCAATTATTTGATCATTCCAATTTTTTTGGTCCTGAAATTGGGCTTATTAAAAGTGCCAATAACATCAACAATGAAGCAACGACGACGACAACAACAACAACCCATGATTCCTCCCAAAACAAGGCCAAAACTGATCATACTTCACCAAAAAAGCCCATTTCTAAAAAGAAATCATCAAGTGGGATGAAGAAGGACAGACATAGCAAGATCTGCACGTCAAAAGGGCCAAGAGATAGAAGAATGAGGCTTTCACTTGAAATTGCAAGAAATTTCTTTGATCTACAAGATATGCTTGGGTTTGATAAAGCAAGCAAGACTGTGGAGTGGCTTTTTACAAAATCAAGAAGTGCAATTAAGGAGCTGAAGGAGAAATACTTATCAGAGGCCTCTTTTGATTCTACTCTTGTAAGAAAACTTTCAATGTATAATGATAAGGAAGTACTACTACCTAGTGGGAAAAAGAGAAGATCATTAAGGATTGTTGATAAAGAATCAAGATACAAAGCAAGAGCCAGAGCGAGAGAGAGAACGAGGGCAAAGTCGATTCGACGTCGTTTGGAGGTATCAAAAACAGATTTTGAAGGAAACCCAGATGGGGTTTGTGAAATGGGGGATGTTATTGAAGAAATTAGTAGCAGCAAAAGAAAGATTACACATGGTTCACTTTGTGAAGAAAATGAGAAAATTTTGGGGCGGTCAAAAGGGAAAAACTCAGATAAAAGGGTTTCAAACGAAATAAGCTCTGATGAGATTCATCTTCTTCCTGGTTCTTCCATGGATATATGGCCACCCTGTCCTTGGACACCTTGA 1026 37.43 MLASSNTNQISSFPFMNQSTSIEKSIQIHDENHDQNHPPSLQLIDCYNYNFNPFLDDHQEFILGHILYSQKQQLFDHSNFFGPEIGLIKSANNINNEATTTTTTTTHDSSQNKAKTDHTSPKKPISKKKSSSGMKKDRHSKICTSKGPRDRRMRLSLEIARNFFDLQDMLGFDKASKTVEWLFTKSRSAIKELKEKYLSEASFDSTLVRKLSMYNDKEVLLPSGKKRRSLRIVDKESRYKARARARERTRAKSIRRRLEVSKTDFEGNPDGVCEMGDVIEEISSSKRKITHGSLCEENEKILGRSKGKNSDKRVSNEISSDEIHLLPGSSMDIWPPCPWTP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2969222 2970247 + Lsi04G002940.1 Lsi04g00294 660343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00294 341 ProSiteProfiles TCP domain profile. 135 193 IPR017887 -
Lsi04g00294 341 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 273 IPR005333 GO:0003700
Lsi04g00294 341 ProSiteProfiles R domain profile. 235 252 IPR017888 -
Lsi04g00294 341 PANTHER TRANSCRIPTION FACTOR TCP1 42 273 - -
Lsi04g00294 341 Pfam TCP family transcription factor 135 198 IPR017887 -
Lsi04g00294 341 MobiDBLite consensus disorder prediction 100 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00294 - - - csv:105435582 403.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00294 Lsi09g00602 CCT
Lsi04g00294 Lsi09g00602 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00294 Lsi-Chr4:2969222 Lsi05g00398 Lsi-Chr5:5019407 9.41E-25 dispersed
Lsi02g00165 Lsi-Chr2:1386697 Lsi04g00294 Lsi-Chr4:2969222 2.91E-17 wgd
Lsi04g00294 Lsi-Chr4:2969222 Lsi06g01349 Lsi-Chr6:24096487 4.05E-23 wgd
Lsi04g00294 Lsi-Chr4:2969222 Lsi09g00602 Lsi-Chr9:6568549 5.08E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g254 . Blo16g01048 . Bda11g01129 Bpe13g01326 . . . . Cmo18g01066 . Cma18g01048 Car04g01587 Car18g00973 Sed11g1580 Cpe09g00271 Cpe01g01756 Bhi07g01375 Tan04g0902 Cmetu10g0068 Lac13g0454 Hepe01g1225 . . Cla05g02333 Cam05g2507 Cec05g2530 Cco05g2573 Clacu05g2501 Cmu05g2363 Cre05g2479 Cone13ag0859 . . . Lsi04g00294 Csa05g02078 Chy10g01112 Cme10g00295 . . . Bda11g01129 . . . . . . . . Cma15g01416 . Car15g01279 Cpe13g00032 . . . . . . . . Cla01g00558 Cam01g0582 Cec01g0574 Cco01g0597 Clacu01g0576 Cmu01g0547 Cre09g1960 Lsi09g00602 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002245 2 1 1 2 1 2 4 2 2 2 2 2 3 2 2 3 2 1 4 2 2 2 2 2 3 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25121 PF03634 TCP 1.70E-35 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00294 Lsi_Chr04 FPKM 15.957544 14.512472 9.767831 11.021229 16.601717 15.25697 16.777435 0.861315 0.699303 0.837194