Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00295 ATGGACCCCAAAACAGGGGTCTTTGAACAAATTTCATGGTCAACATGCTTTGAGAGAGAGAGCAAGGAAATTAGATCAGGGCATCCTGATAATAAGGCATCCACTTTTGATGCTTCAACATCGTTGCCTAGGTTCGAGATGCCTTACAATATATGGTGTGGTGGCTGCAACTCAATGATAGCAAAGGGTGTTAGGTTCAATGCGGAGAAAAAGCAAGTTGGAAACTATTATTCTACAAAGATATGGAGCTTTACTATGAAAGCAGCATGCTGTAGACAAGAGATTGTTATTCAGACCGATCCAAAAAATTGTGAGTATGTGATTATCAGTGGTGCACAACGGAAAACTGAGGAATATGACATAGAGGATGCAGAAACCTTTGAACTCCCTGCAGATGAAGAATGTTATGTAACCCTTTTGAATATATTTTCTACAGAAAAGGGTAAGCTTGCAGATCCATTTTATCGACTTGAACACCAGGAAAAAGATATGCAGAAAAAGAAAGAAGCCGAGCCAGTATTGGTTCGGCTACAGCGACTCTCAGATTCTAGACATTCAGATGACTATAGTCGGAATAGAACACTTCGAGCTCAGCTCAGAAGTCAAAAGAAAAGAGTTGCTGAAGAAGAAAATGTTTCTAGGAAGATGGGCCTCGGTATACGATTGCTTCCAGCAACTCAAGAAGATTCTGCAGCTGCAGCTCGCATGAAGTTCTCTTCAAAGTTTGAGAAGAATCGTAGGGATAAACGGGCATTGATTCATGCTTCCTCGATATTTAATGGATCATCCACTTCTTCCATGCCTGATAAGAAACGATTGGACCTGGAATCCAAGAGAAGGAAGATCTGTGCATCTGCGGCTTCAAACATACTGACAGGGGGCTTCAAGCCATCATCTTGGTCACGAAGTGCAGCTAATTCAAGCCAACTGGAAGGAACTTCTGTAACTACCAGACGATTGTAA 963 41.74 MDPKTGVFEQISWSTCFERESKEIRSGHPDNKASTFDASTSLPRFEMPYNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKAACCRQEIVIQTDPKNCEYVIISGAQRKTEEYDIEDAETFELPADEECYVTLLNIFSTEKGKLADPFYRLEHQEKDMQKKKEAEPVLVRLQRLSDSRHSDDYSRNRTLRAQLRSQKKRVAEEENVSRKMGLGIRLLPATQEDSAAAARMKFSSKFEKNRRDKRALIHASSIFNGSSTSSMPDKKRLDLESKRRKICASAASNILTGGFKPSSWSRSAANSSQLEGTSVTTRRL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2975723 2980195 - Lsi04G002950.1 Lsi04g00295 660344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00295 320 Coils Coil 192 212 - -
Lsi04g00295 320 MobiDBLite consensus disorder prediction 295 320 - -
Lsi04g00295 320 Pfam Saf4/Yju2 protein 44 282 IPR007590 GO:0000398
Lsi04g00295 320 PANTHER BNAA08G19540D PROTEIN 27 320 - -
Lsi04g00295 320 PANTHER SPLICING FACTOR YJU2 27 320 IPR007590 GO:0000398
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00295 K13115 CCDC130; coiled-coil domain-containing protein 130 - csv:101205009 495.352
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g253 . . . . . . Bma14g01696 . Cmo04g01610 Cmo18g01068 . Cma18g01049 Car04g01588 Car18g00974 Sed02g0131 Cpe09g00270 Cpe01g01367 Bhi07g01376 Tan04g0903 Cmetu10g1044 Lac13g0453 Hepe01g1226 . . Cla05g02334 Cam05g2508 Cec05g2531 Cco05g2574 Clacu05g2502 Cmu05g2364 Cre05g2480 . Cone19ag0859 . . Lsi04g00295 Csa05g02574 Chy10g01111 Cme10g00296 . Blo11g00829 . . Bpe11g01689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009355 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00295 Lsi_Chr04 FPKM 14.349835 16.575161 9.070895 9.485297 17.816099 15.624362 16.303221 3.846152 3.519122 3.641123