Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00297 ATGTGCTCTTCTTCTTCTTTTGCATCTACCTTCTCTTTATTCCTTACGAAGTCGCCGTCGATTTCACGACGTCGGAATGTTCTTTCCCCCAACTCCCATCTATTCCTCGGCCATCTCAGGCCGTCCACTAACTCTACATTTCGTATTACTGCCTCAATTACTGAAAGAGACCTCGATCTCTCGTCTTGGTTTAATCCCGACCAACCCAACAACGATGACGCCTACGGTGGCTGGATATTTCTCAACTCTCCAACCAGCGTCGCAAAAACCGAGAAACGAGGGCTGCCTCGTTTCGTAATAGGGGTGGTTGGGACCGCGCTTGTTGTTTTGTTCGCCGTTGTTGCTCAGATTTCATTATCTAGAAGAGGGTTTAAGTTTCAGTGGCGTACTCCCTTGAGATCATTGGAAGGGGTATTTAGTCGTACGGAAAATGTAAGTGATCATGGCAAAACAGTGGAGGATAGTTTAACCAATGATGACCTACCGACTAAATCTGGTGCTGAGTCTATACCTGATTCTAAGATTGATGACGCTGTTACTTCAGATTCTGGGAATAAGCTTGAACGAGTTATAATCACTGTCCCTGTTGATTCTGCTCAAGACGAAGCTATATCAATTTTGAAGAAACTTAAGGTTATTGAAGATAATATTAATGCTGGAGAGTTGTGTAGTAGAAGGGAATATGCAAGGTGGCTAGTTCGTATGTATTCATCATTGGAAAGGAATCCAAAACACCATATTATTCCAGCTGTTTCGCTTTCTGGGTCAACAGTTGCTGCTTTTGATGATATAAGTTTTGAAGATCCTGATTTTGAGTCCATTCAAGCTCTAGCAGAAGCTGGTATCATACCCAGTAAGTTATCACCAAACTACGGATATGATGGCTTGGGAGATCGTGAGAGAACTTGTTTTTTTCCTGAGAGGTTTGTATCTCGCCAGACTTTGATAGACTGGAAAGCCCAGTTGGATTATGAGTTTGTTCCTGGAATGCTGGAACGGATATCAAGTACAAAGGTGGATTTTATGGACTTGAAGGAGATCAGTTCAGAAGCATCGCCACAACTGTTCATGGATATTTTAGCTGGGGAGAGAAGCATTCTCAGAAAAGTTTTTGGTCGAATCAAACGGTTTCAACCAAACAAACCTTCAACAAAAGCACAAGTAGCAGTCACACTGGTAAGTGGCAGGATGACAGAAGCAATCGCTGCTGAATTATCAAGACTGGAATCAGAGAGTTCTGCTAGAAAAGCTGAGATAGAAGATATCAAGTTGGAATTGGTAGAAAGAGGAGACATACAAAGGTATTGGGATAAGAAGCTGACTGAGGAGAGAAAACACCTTATCAAGGTGGAGGAACTTTATCTTGCTGCTGTCAGTGATTTGGGAGAGGAGAAGATTGTTCAAGAGAAGTTTCTTTCCGAGTATTTGAAGGAGAAGGCATCTATAGACTGTCAGAGGCAATTGCTTCTCAGTCTCAAGGAAGAAGTTGATGGGATGACACAAAAGCTTCTTTCTGAGAGATCTGTATGTGAGACAGAGCAGAGTGAGCTACACAATATGCATGCCGATTTACAGAACCAGCTGGAAGAAATGCTTGATACAAAATCTGTGCTTGAAGCTGAGAAAGAAGCTCTCCGTATTCTTAGATCTTGGGTCGAAGACGAAGCAAGGAAAAGCCAAGCTCGTGCTAAAGTTCTCGAGGAGGTCGGACGAAGGATCCATAAACGTGAGAAGATGATAAGGGTGATGGGTCTAAGAATGCTTGATGGAAATATGGCCATTGGACTTGGGCTAGGGCTTGTGGTTGCTGCTTCAATTGCAGCCTATGCAGTAAGGCAGCTCAATGTTAAAAACTCAAAGTCCATTGCCTCCGTCGACAAGCTCACAGAAAATGGTGAAGAGAAGGAGGAGGTTAAACATTCTAACCATGGCTTCAAAGATGATTATGGGGAGGAAGAGGAGGAGGAAGAAGTCAAGTTAATTAGTAGCGTATTTGATCAAGTTCCTGTTTATATAACTGAAGATGAAGACATTTTACCTGAATTTGAAGACCTTCTATCTGGGGAAATTGAATTCCCATTACCTGAAATTGATGACAGTAAAGCTGAGAAGGATAGAGTATATGAAACTGAGATGGCAAACAATGCGAGTGAACTGGAGCGATTGCGCAACTTAGTAAAGGAACTGGAGGAGAGGGAAGTAAAGCTTGAAGGTGAACTGCTTGAATACTATGGATTGAAAGAACAGGAATCTGACATTACAGAGTTACAGAGGCAGCTCAAGATCAAGGCAGTAGAGATTGATATGCTCAATATTACCATTAGCTCTTTGCAGGCTGAAAGGAAGAAGCTTCAAGAAGAGATTGCACAAGATGCTACAGTGAAGAAGGAGTTGGAATTTGCAAGGAATAAGATCAAAGAGCTGCAGAGGCAGATTCAACTTGATGCTAACCAAACAAAAGGCCAGCTATTATTGCTCAAGCAACAAGTTTCTGGTCTACAGGCAAAGGAGCAGGAAACTATAAAGAAAGATGCTGAACTAGAAAAGAAGTTGAAAGCTGTGAAGGAATTGGAGGTTGAAGTTATGGAACTCAAGCGGAAGAACAAAGAGCTTCAAATTGAAAAGCGGGAGCTGACTATTAAGCTGGATGCTGCTGAAAATAAAATCTCCACTCTGTCGAACATGACAGAAAGTGAATTGGTATCCCAGACTAGAGAGCAAGTCAATAATTTAAGGCATGCAAATGAGGACTTAATAAAGCAAGTTGAAGGACTTCAGATGAATAGGTTCAGTGAAGTTGAAGAATTAGTGTACCTTCGATGGGTCAATGCATGCTTAAGATATGAACTTCGCAATTACCAGGCTCCTACAGGAAAAGTATCAGCTCGTGATCTCAACAAGAATCTGAGCCCAAAATCTCAGGAGAAAGCTAAGCAACTCATGTTAGAGTATGCAGGATCGGAACGTGGACAAGGGGACACAGATCTTGAAAGCAACTACTCCCAACCATCTTCTCCTGGAAGTGAGGATTTTGACAATGCTTCAATTGATAGTTCCTTTAGTAGATATAGTAGTCTCAGTAAGAAACCTAGCTTGATCCAGAAGTTGAAGAAATGGGGTGGTAGAAGCAAAGATGATTCTAGTGCTCTTTCATCACCAGCCAGATCCTTTTCTGGGGGTTCTCCTGGCAGGTTGAGCATGAGTCAAAAGCCGAGGGGTCCATTAGAATCGTTGATGCTTAGAAATGCGAGTGATAGTGTTGCAATCACCACCTTTGGTACGATGGAACAGGAAATTCCTGACTCTCCAGGCACTCCAAATCTCCCAAGTATCAGAACTCAAACTCCTAATGACTCCTTGAATTCAGTAGCATCATCATTCCAACTAATGTCTAAATCCGTTGAAGGAGTGTTAGATGAGAAATATCCAGCATACAAAGACCGACATAAGTTGGCATTAGCAAGGGAGAAGCAAATTAAGGAAAAGGCGGATCAGGCAAGAGCAGAGAGGTTTGGCAATATTTCAAATTCCAACTTGAACTCTGAATTTAAAGGTAAGACTGAGAGAGATAGACCTATAACTTTGCCGCCAAAACTTACTCAAATAAAGGAAAAACCAGTTGTATCTAGTGTTGCTGCTGATGCATCTGGTGAAAATAAAACGACGGAGTCTCCAGCTATCAGCAGGATGAAGCTAGCAGAGATTGAGAAGCGGCCTCCACGGACACCTAAGCCACCACCAAGACCATCAGCAGGTGCTTCTGTAAGCACAAATCCCAATTCTCAGGGTGGTGTACCAGCTGCTCCACCTCTCCCACCTCCACCTCCTGGTGCCCCACCACTTCCTCCAACTGGTGGACCACCTCGTCCGCCTCCTCCTCCAGGAAGCTTGTCTAAAGGTGTAGGTGGTGATAAGGTTCATAGAGCTCCTGAGTTAGTTGAGTTCTATCAGACATTGATGAAACGAGAAGCAAAGAAGGATACTCCTTTACTTTCTTCTACGTCATCTAATGTGTCTGATGCTAGGAGTAACATGATTGGGGAGATTGAGAACAGGTCATCATTCCTTATAGCGGTAAAAGCTGATGTGGAAACTCAAGGTGATTTTGTCATGTCATTGGCAGCTGAAGTTCGAGCAGCTACATTCTCTAATATAGAGGATGTTGTGGCCTTCGTAAATTGGTTAGATGAAGAGCTATCATTCTTGGTTGATGAAAGGGCAGTCCTGAAGCATTTTGATTGGCCAGAAGGAAAAGCAGATGCATTGAGAGAGGCATCTTTTGAATACCAGGACCTTATGAAGTTGGAGAAGCGGGTCACCACGTTTGTTGATGAACCTAAACTCTCATGTGACGCAGCTTTAAAGAAAATGTACTCCTTGCTTGAGAAGGTTGAGCAGAGTGTCTATGCACTCCTACGCACAAGAGACATGGCTATCTCGCGATATAGAGAGTTCGGAATTCCAGTTGATTGGTTATCTGATACAGGCGTTGTTGGAAAGATCAAGCTCTCATCTGTACAATTAGCAAGGAAATACATGAAGCGTGTAGCATCAGAACTCGATGCAATGAGTGAACCAGAGAAGGAGCCAAATAGAGAGTTTTTGGTCCTGCAAGGCGTCCGTTTTGCTTTCCGCATTCATCAGTTTGCGGGAGGCTTCGATGCAGAGAGCATGAAGGCTTTTGAAGAGTTGAGGAGTCGAGTTCATACAACACAGATAGGAGATGACAATAAGCAAGAAGCCTGA 4746 43.0 MCSSSSFASTFSLFLTKSPSISRRRNVLSPNSHLFLGHLRPSTNSTFRITASITERDLDLSSWFNPDQPNNDDAYGGWIFLNSPTSVAKTEKRGLPRFVIGVVGTALVVLFAVVAQISLSRRGFKFQWRTPLRSLEGVFSRTENVSDHGKTVEDSLTNDDLPTKSGAESIPDSKIDDAVTSDSGNKLERVIITVPVDSAQDEAISILKKLKVIEDNINAGELCSRREYARWLVRMYSSLERNPKHHIIPAVSLSGSTVAAFDDISFEDPDFESIQALAEAGIIPSKLSPNYGYDGLGDRERTCFFPERFVSRQTLIDWKAQLDYEFVPGMLERISSTKVDFMDLKEISSEASPQLFMDILAGERSILRKVFGRIKRFQPNKPSTKAQVAVTLVSGRMTEAIAAELSRLESESSARKAEIEDIKLELVERGDIQRYWDKKLTEERKHLIKVEELYLAAVSDLGEEKIVQEKFLSEYLKEKASIDCQRQLLLSLKEEVDGMTQKLLSERSVCETEQSELHNMHADLQNQLEEMLDTKSVLEAEKEALRILRSWVEDEARKSQARAKVLEEVGRRIHKREKMIRVMGLRMLDGNMAIGLGLGLVVAASIAAYAVRQLNVKNSKSIASVDKLTENGEEKEEVKHSNHGFKDDYGEEEEEEEVKLISSVFDQVPVYITEDEDILPEFEDLLSGEIEFPLPEIDDSKAEKDRVYETEMANNASELERLRNLVKELEEREVKLEGELLEYYGLKEQESDITELQRQLKIKAVEIDMLNITISSLQAERKKLQEEIAQDATVKKELEFARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEQETIKKDAELEKKLKAVKELEVEVMELKRKNKELQIEKRELTIKLDAAENKISTLSNMTESELVSQTREQVNNLRHANEDLIKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQAPTGKVSARDLNKNLSPKSQEKAKQLMLEYAGSERGQGDTDLESNYSQPSSPGSEDFDNASIDSSFSRYSSLSKKPSLIQKLKKWGGRSKDDSSALSSPARSFSGGSPGRLSMSQKPRGPLESLMLRNASDSVAITTFGTMEQEIPDSPGTPNLPSIRTQTPNDSLNSVASSFQLMSKSVEGVLDEKYPAYKDRHKLALAREKQIKEKADQARAERFGNISNSNLNSEFKGKTERDRPITLPPKLTQIKEKPVVSSVAADASGENKTTESPAISRMKLAEIEKRPPRTPKPPPRPSAGASVSTNPNSQGGVPAAPPLPPPPPGAPPLPPTGGPPRPPPPPGSLSKGVGGDKVHRAPELVEFYQTLMKREAKKDTPLLSSTSSNVSDARSNMIGEIENRSSFLIAVKADVETQGDFVMSLAAEVRAATFSNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREASFEYQDLMKLEKRVTTFVDEPKLSCDAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLSDTGVVGKIKLSSVQLARKYMKRVASELDAMSEPEKEPNREFLVLQGVRFAFRIHQFAGGFDAESMKAFEELRSRVHTTQIGDDNKQEA 1581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2985210 2998143 - Lsi04G002970.1 Lsi04g00297 660346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00297 1581 Coils Coil 901 928 - -
Lsi04g00297 1581 Coils Coil 712 739 - -
Lsi04g00297 1581 Coils Coil 847 895 - -
Lsi04g00297 1581 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 598 1579 - -
Lsi04g00297 1581 MobiDBLite consensus disorder prediction 1173 1304 - -
Lsi04g00297 1581 MobiDBLite consensus disorder prediction 1037 1072 - -
Lsi04g00297 1581 MobiDBLite consensus disorder prediction 1045 1065 - -
Lsi04g00297 1581 MobiDBLite consensus disorder prediction 149 181 - -
Lsi04g00297 1581 MobiDBLite consensus disorder prediction 992 1014 - -
Lsi04g00297 1581 Coils Coil 521 548 - -
Lsi04g00297 1581 Coils Coil 405 425 - -
Lsi04g00297 1581 MobiDBLite consensus disorder prediction 988 1014 - -
Lsi04g00297 1581 MobiDBLite consensus disorder prediction 1265 1297 - -
Lsi04g00297 1581 Coils Coil 746 818 - -
Lsi04g00297 1581 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 598 1579 IPR040265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00297 - - - csv:101205484 1632.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00297 Lsi-Chr4:2985210 Lsi05g01216 Lsi-Chr5:20026351 1.79E-60 dispersed
Lsi01g00250 Lsi-Chr1:2260527 Lsi04g00297 Lsi-Chr4:2985210 1.13E-94 transposed
Lsi02g01262 Lsi-Chr2:16758515 Lsi04g00297 Lsi-Chr4:2985210 1.28E-66 transposed
Lsi02g02977 Lsi-Chr2:35871782 Lsi04g00297 Lsi-Chr4:2985210 7.73E-66 transposed
Lsi05g01383 Lsi-Chr5:21712347 Lsi04g00297 Lsi-Chr4:2985210 1.94E-65 transposed
Lsi04g00297 Lsi-Chr4:2985210 Lsi09g00609 Lsi-Chr9:6611630 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g250 . . . . . . . . Cmo04g01614 . . . Car04g01591 . . . Cpe01g01370 Bhi07g01379 . . Lac13g0450 . . . Cla05g02336 Cam05g2510 Cec05g2534 Cco05g2577 Clacu05g2504 Cmu05g2366 Cre05g2483 Cone13ag0862 Cone19ag0862 . . Lsi04g00297 Csa05g02571 . Cme10g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008211 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00297 Lsi_Chr04 FPKM 4.104997 2.794367 5.919995 6.070681 5.857975 3.995563 6.317575 0.275381 0.0 0.0