Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00298 ATGGCTTCCGAGAGTGGTTCCAGATCCAGTTCAGCGGCCGATTCATATATTGGAAGCTTGATAAGTTTAACTTCCAAGAGTGAGATTAGATACGAAGGTGTTCTTTACAACATCAACACCGAAGAGTCCAGTATCGGACTGAGAAATGTACGGTCATTTGGAACAGAAGGCAGAAAGAAGGATGGATCTCAAGTCCCACCAAGCGACAAAGTTTTTGAATACATCTTGTTCCGTGGAAGTGATATCAAGGATCTACAGGTAAAATCTTCTCCTCCTGTTCAGACTACATCCTTGATAAACAATGATCCAGCTATTATTCAGTCTCACTATCCTCGTCCAGCATCGACTTCTCCAAGCTTGCCTCCTCCTGTTAGTGGGCCTTTGCCTGATATTAATTCTCAGGCCATGCCAATGGGAATTCCTGTTTCTAATTTCCAGGGTGGGTTGCCTTTATATCAACCTGGAGGAAATGTAGGGTCTTGGGGAGCTTCTCCTACGCCACCTCCCCCAAATCCAAGTGGTGGTGGGCTTGCTTTGCCAATGTACTGGCAAGGGTATTATGGCCCCCCTAATGGACTTCCTCATATGCATCAGCAGTCATTACTTCGTCCACCACCTGGCCTGTCATTGCCTTCTTCCTTGCAGCAGCCACTGCAATATCCTAATCTTAATGCTTCTTTACCCACTGGCGCAACAAATTTATTAGAAGTTCCATCTTCTTTATTCTCTGCTAATCCTACCACTCCTAGTCTACCATCCGCAGCAATGCCACCAGTAACTGTATCTTCGACACTTCCATCTGTGCTTTCGGCTCCACAGACCTCTGAGATATCATCAAGCTCAGTGGCTAACAAGACAGTAAATTCTGCTCTTCCTCAAGCTCCTCTAAGTACCAACTTGCCATCACTCTCTCCTTTGACGGCAAGTTCAGATGTCAGTCCTGTTGTGCCTCCAACTACTAACAATACTACTACAGTTTCTGGTCCAGCATTGTCTTATCAAACCGTCTCTCAATCTACATCCTCTGTTGTTGGAACATCGAACTCTGTTCTCACAGGTGCACCTGCACCTACCCTTGTGACTCCAGGACAGCTGTTGCAAACTACTGTAGCCTCTTCATCTTTGCAAACAGTTCAAAAAGACGTTGAAGTAGTTCAAACATCTTCCTCATTAGCAGCCGAACAAACTGTTCCAGCAGCAGATACTCAGCCACCACTATTACCATTACCGGCATCTTCAGGGCCTATTCATAAGCCAAATGGTTCAACTTCACAAACTCGGTACATCTACAGGGGACGTGGTAAAGGAAGACGATTTGGGAACTCACATCAAACAGAAAGATTTACGGAAGATTTTGACTTCATGGCAATGAATGAGAAATTTAACAAGGATGAAGTCTGGGGTCATCTTGGCAAGAATACCAAATCTCATCCAAAGTACACTGATGGGGATGAAAAGTTCAGTGATGAAGATGATGTCTATGAAGAAGACGATGGTGAATCGTCAAAGTTAGAGATCAAGCCTGTGTACAATAAGGACGACTTTTTTGATACTCTCTCGTGCAACAATCCTGTCAATGAAGCTCAAAATGGAAGGAGAACCAGATACTTCGAACAAATCAAGTTGGACACTGAGACATTTGGTGAATTTGCAAGATTCCGAGGTGGTCGTGGTGGTTTTGCTTCTGGACGTGGTGGCCGTCGTGGTGGTTATTACAGGAGAGGATATGGCCATGTTGGAAGGGGTCGAGGGCGGGGAATGCATAACTATAATCCCCTACCTACCACTGTACTCTTGGCTGAGCCAAGATCGTTGAGCTGCAGGCCGCCTTTCTCTGTTCCCATGGCCGCAGCATTGCCCTCACTGACCCCATTACTCATCTTTGCCAGAATCTTTGGTCTGCTTGTGGCCGTTCTGGTCTTCGTTTGGGCTTTTGCATTCAGTTCCAGCTTCGGCCATCCCTCCCCTGCCCGTGACGACCATCTCTTCGACGTTCTGCATCCTTTGTTCATGGTAATTGGTCTCATTCTCCTCAGCGGAGAAGCAATTTTGATCCATAGCTGGTTGCCTGGTTCGAGAAATTTGAGGAAATCTGTTCATCTGAGTCTTCAAGGGCTGGCTTTGGCTTCTGGGATTTCCGGAATTTGGACCAAGTTTCATTGGGATCGTGGCTTTTTGGCTAATTTCCACAGTTTACATTCTTGGATGGGTTTGATTGTTGTTATTTTGTTCGGAGCTCAGTGGATGATGGGGTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGGGCAACAAGAGAAAGAGTGCTGCCATGGCATGTGTTCCTTGGGTTATACAGTTATGCATTGGCAGTGGTAACAGCAGAAACAGGGCTTCTTGAGAAGTTGACATCGTTGCAAACCAAGAGAAATGTCCCTAGGAAAGGTCCTGAAGCCATGGTTGTAAACAGTTTAGGCTTGGCATTGGCTTTGCTTACTGGAATGGTGATGCTCACTGCTATATCTCCTAAATATCCTCCTTCCCTCCCCACCACCAAACAACCATTTTTCTCAAATTCAAAGCCCTTACCTTCTTAA 2574 45.84 MASESGSRSSSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGSQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQTTSLINNDPAIIQSHYPRPASTSPSLPPPVSGPLPDINSQAMPMGIPVSNFQGGLPLYQPGGNVGSWGASPTPPPPNPSGGGLALPMYWQGYYGPPNGLPHMHQQSLLRPPPGLSLPSSLQQPLQYPNLNASLPTGATNLLEVPSSLFSANPTTPSLPSAAMPPVTVSSTLPSVLSAPQTSEISSSSVANKTVNSALPQAPLSTNLPSLSPLTASSDVSPVVPPTTNNTTTVSGPALSYQTVSQSTSSVVGTSNSVLTGAPAPTLVTPGQLLQTTVASSSLQTVQKDVEVVQTSSSLAAEQTVPAADTQPPLLPLPASSGPIHKPNGSTSQTRYIYRGRGKGRRFGNSHQTERFTEDFDFMAMNEKFNKDEVWGHLGKNTKSHPKYTDGDEKFSDEDDVYEEDDGESSKLEIKPVYNKDDFFDTLSCNNPVNEAQNGRRTRYFEQIKLDTETFGEFARFRGGRGGFASGRGGRRGGYYRRGYGHVGRGRGRGMHNYNPLPTTVLLAEPRSLSCRPPFSVPMAAALPSLTPLLIFARIFGLLVAVLVFVWAFAFSSSFGHPSPARDDHLFDVLHPLFMVIGLILLSGEAILIHSWLPGSRNLRKSVHLSLQGLALASGISGIWTKFHWDRGFLANFHSLHSWMGLIVVILFGAQWMMGFLSFWHWREVRATRERVLPWHVFLGLYSYALAVVTAETGLLEKLTSLQTKRNVPRKGPEAMVVNSLGLALALLTGMVMLTAISPKYPPSLPTTKQPFFSNSKPLPS 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2998833 3009900 - Lsi04G002980.1 Lsi04g00298 660347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00298 857 CDD LSm14_N 16 87 IPR025609 -
Lsi04g00298 857 SMART FDF_2 446 551 IPR019050 -
Lsi04g00298 857 Pfam Eukaryotic cytochrome b561 666 796 IPR006593 -
Lsi04g00298 857 Gene3D - 6 92 - -
Lsi04g00298 857 ProSiteProfiles Cytochrome b561 domain profile. 628 833 IPR006593 -
Lsi04g00298 857 Gene3D - 616 838 - -
Lsi04g00298 857 ProSiteProfiles DFDF domain profile. 440 476 IPR025762 -
Lsi04g00298 857 ProSiteProfiles FFD box profile. 508 523 IPR025761 -
Lsi04g00298 857 Pfam FDF domain 447 549 IPR019050 -
Lsi04g00298 857 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Lsi04g00298 857 MobiDBLite consensus disorder prediction 468 486 - -
Lsi04g00298 857 SMART LSM14_2 10 110 IPR025609 -
Lsi04g00298 857 PANTHER SCD6 PROTEIN-RELATED 5 585 - -
Lsi04g00298 857 PANTHER PROTEIN DECAPPING 5-LIKE 5 585 - -
Lsi04g00298 857 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Lsi04g00298 857 SMART 561_7 666 791 IPR006593 -
Lsi04g00298 857 CDD Cyt_b561_ACYB-1_like 660 799 - -
Lsi04g00298 857 MobiDBLite consensus disorder prediction 468 502 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g00298 Lsi09g00611 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00225 Lsi-Chr3:2843153 Lsi04g00298 Lsi-Chr4:2998833 2.33E-53 transposed
Lsi04g01170 Lsi-Chr4:17040809 Lsi04g00298 Lsi-Chr4:2998833 2.42E-29 transposed
Lsi05g00005 Lsi-Chr5:72543 Lsi04g00298 Lsi-Chr4:2998833 5.95E-39 transposed
Lsi09g00711 Lsi-Chr9:8102080 Lsi04g00298 Lsi-Chr4:2998833 3.13E-34 transposed
Lsi04g00298 Lsi-Chr4:2998833 Lsi09g00611 Lsi-Chr9:6633908 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00298 K18749 - csv:101205721 857.44