Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00305 ATGTCATCACCCTCTTCCTTTCAACACTCACAACAATCTCTTCTTCTTCTTCATCATCATTCCCTCTCTCAGACTCTGCTTCAAACAGAGTATAACAATATGGTCAAATTCTCCAAGCAATTTGAGGGACAATTGATCCCTGAATGGAAACATGCTTTTGTTGATTATTGGCAACTAAAAAAAGACCTCAAGAAACTTTATCTTCTTAAAAATGATAACAATCCCGCCACTGCCACCGTCCCCGCCACCACCGCAGCAACTACCCTCTGTTCTTCTATAAAGAAACTCTCTATGTTTTGTCACCAACATAGAGATCATGGACCTATTCATGTCCATAAGAAACTTGCTTCCTCTGCTAGCAAGGGAGATATGTATGAAACAGAGCTGTTGGATCAATTTGCTGATACAACTGCAGCAAAGGAATTCTTTTCTTGTCTGGATTTTCAGCTTAATAAGGTGAATCAATTCTTCAAGACAAAGGAGACTGAGTTCATGGAGAGAGGAGACAGCTTGAAGAAACAGTTGGAGATTCTCATTGATTTGAAATCCGCGATCCAAAACCCGTGTCAGACCGGCGATATTGCACCAGATTCTAAGGAGGATAGTTCCATTTCTTACACAATTTCTTGTGAGGAGTCTGTTAAGGACAAAACAGGGCAAGAACAGTCCCAAGAGAACATCAATGATGAATTGGAGAAGACAGAGTTGGCATTTTCAGACTCACCAAGATCAGAAGAAATGGGAAACTCAACAAGAGCTAAAAGCTTGGATCGAAAATGGAGATCCTTCTCGGGTCGAATTATCAGTTTTCAGGGCAAGAACATAAAAATGAACATTCCTCTGACAACCCCATCTAGGACATTCTCAGCTATAAGCCATTTATTCAGGGAAGATTTGGCAAACTCAAAGAAATGCAATGAAGGAACAAAACTTCACATTAACAAGACTAGGTTGCACCATGCAGAGAAGATGATCAAAGGAGCTTTTGTTGAGCTCTATAAGGGATTGGGGTTTCTCAAAACTTACAGGCACTTGAACATGCTTGCCTTTATAAAGATTTTGAAGAAGTTTGACAAAGTCACTGGAAAACAAGTTCTTCCCATTTATCTGAAAGTTGTGGAAAGTTCCTATTTCAACAGCTCAGACAAGGTTATAAAGCTAGCAGATGAGGTAGAGGAGCTATTTATCAAAAACTTTGCTGAGGAAGACAAAAGGAAGGCCATGAAATACCTTAAACCGAAACAGCGTAAAGAGTCACACGGCATTACGTTCTTCGTCGGACTGTTCGCTGGGTGTTTCATTGCACTTCTTGCTGGTTATGTAATCATGGCTCATATCATGGGGATCATGTTCAGCTTGATGTTCTTACATTTTTTCCTCTATGGCTGCAACATCTTTGCCTGGAGAAAGACTCGGATAAATTACAGCTTCATTTTCGAGTTATCGGCCACAAAGGAACTTAAATACAGAGATGTGTTCTTGATTTGTACCACTTCAATGACTGCTGTCATTGGGGTCATGTTTGTTCATTTGGCACTGCTTTCAAAAGGGTACTCTTATACTCAAGTTCAAGTGATCCCTGGCCTTCTCTTGCTGTTTTTCTTGCTGTTACTTGTGTGCCCCTTCAACATTTACTATCAATCAAGCCGCTACCGTTTCCTTCGTGTGATGAGAAATATAGCCTTTTCACCTCTCTACAAGGTAGTGATGTTGGACTTCTTCATGGCAGATCAGCTATGTAGTCAGGTTCCAATGCTACGAAACCTTGAGTACATGGCCTGCTACTACATAACAGGAAGCTACAAAACACAGAATTACAACTACTGTATGAATGCCAAGCATTACCGAGATCTCGCTTATGCGGTTTCGTTTCTACCTTACTACTGGAGAGCAATGCAGTGTGCAAGGCGCTGGTTTGATGAGGGACAGACAAGCCACCTTGTCAATCTAGGAAAGTATGTCTCAGCAATGTTGGCTGCAGGGGCCAAAGTGGCATATGAGAAAGACAAGGCCAAAGGAGTTGGATGGTTATGTCTTGTGGTGGTTATGTCAAGTGGAGCAACTGTGTACCAATTGTATTGGGACTTTGTAAAGGATTGGGGTTTGCTTCAAGTGAATTCCAAAAATCCATGGCTTAGGAATGATCTAATGCTTCGACGAAAGACCATTTACTACTTCTCCATGGGTTTGAACTTTATTCTTAGGCTTGCCTGGTTGCAAACTGTTCTCCATTCAACTTTTGGACATGTTGATTCAAGAGTTACTGGACTGTTCTTAGCAGCTCTTGAAGTCATTAGAAGAGGGCTGTGGAATTTTTTCAGGTTGGAGAATGAGCATCTTAATAATGCTGGAAAATTTAGAGCAGTTAATCCAGTACCACTTCCATTTGATGAAGTTGATGAGGTAGATTGA 2412 41.0 MSSPSSFQHSQQSLLLLHHHSLSQTLLQTEYNNMVKFSKQFEGQLIPEWKHAFVDYWQLKKDLKKLYLLKNDNNPATATVPATTAATTLCSSIKKLSMFCHQHRDHGPIHVHKKLASSASKGDMYETELLDQFADTTAAKEFFSCLDFQLNKVNQFFKTKETEFMERGDSLKKQLEILIDLKSAIQNPCQTGDIAPDSKEDSSISYTISCEESVKDKTGQEQSQENINDELEKTELAFSDSPRSEEMGNSTRAKSLDRKWRSFSGRIISFQGKNIKMNIPLTTPSRTFSAISHLFREDLANSKKCNEGTKLHINKTRLHHAEKMIKGAFVELYKGLGFLKTYRHLNMLAFIKILKKFDKVTGKQVLPIYLKVVESSYFNSSDKVIKLADEVEELFIKNFAEEDKRKAMKYLKPKQRKESHGITFFVGLFAGCFIALLAGYVIMAHIMGIMFSLMFLHFFLYGCNIFAWRKTRINYSFIFELSATKELKYRDVFLICTTSMTAVIGVMFVHLALLSKGYSYTQVQVIPGLLLLFFLLLLVCPFNIYYQSSRYRFLRVMRNIAFSPLYKVVMLDFFMADQLCSQVPMLRNLEYMACYYITGSYKTQNYNYCMNAKHYRDLAYAVSFLPYYWRAMQCARRWFDEGQTSHLVNLGKYVSAMLAAGAKVAYEKDKAKGVGWLCLVVVMSSGATVYQLYWDFVKDWGLLQVNSKNPWLRNDLMLRRKTIYYFSMGLNFILRLAWLQTVLHSTFGHVDSRVTGLFLAALEVIRRGLWNFFRLENEHLNNAGKFRAVNPVPLPFDEVDEVD 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3097530 3102697 + Lsi04G003050.1 Lsi04g00305 660354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00305 803 MobiDBLite consensus disorder prediction 212 252 - -
Lsi04g00305 803 ProSiteProfiles EXS domain profile. 610 803 IPR004342 GO:0016021
Lsi04g00305 803 Pfam EXS family 451 780 IPR004342 GO:0016021
Lsi04g00305 803 MobiDBLite consensus disorder prediction 214 240 - -
Lsi04g00305 803 Pfam SPX domain 35 73 IPR004331 -
Lsi04g00305 803 Pfam SPX domain 110 373 IPR004331 -
Lsi04g00305 803 ProSiteProfiles SPX domain profile. 35 371 IPR004331 -
Lsi04g00305 803 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 35 801 - -
Lsi04g00305 803 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 1 35 801 - -
Lsi04g00305 803 CDD SPX_PHO1_like 36 367 IPR034092 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00305 K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1 - csv:101206666 1476.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01784 Lsi-Chr1:17197587 Lsi04g00305 Lsi-Chr4:3097530 1.87E-24 dispersed
Lsi04g00305 Lsi-Chr4:3097530 Lsi05g01749 Lsi-Chr5:24872208 0 dispersed
Lsi04g00305 Lsi-Chr4:3097530 Lsi02g01467 Lsi-Chr2:20363442 1.66E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g223 Blo01g00437 . . . . . Bma14g01687 . Cmo04g01621 Cmo18g01077 . Cma18g01055 Car04g01600 Car18g00979 Sed02g1420 Cpe09g00260 Cpe01g01377 Bhi07g01386 Tan04g0919 Cmetu10g1688 Lac13g0442 Hepe10g1855 . . Cla05g02345 . . Cco05g2586 Clacu05g2513 . Cre05g2491 Cone13ag0869 Cone19ag0870 Cone6ag0482 Cone9ag0494 Lsi04g00305 Csa05g02563 Chy10g01103 Cme10g00307 . Blo11g00822 Bda07g01518 . Bpe11g01680 . . . . . . . . . Car15g00855 . . . . . . . . . . . . . . . . . . Chy09g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004322 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00305 Lsi_Chr04 FPKM 9.030392 11.256151 11.199791 12.250897 13.222924 11.847559 13.025038 7.56586 7.265325 6.811686