Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00307 ATGTACAACACTTATGTCAGCTCAACTGTATATTCCATTCGGAGTAAAGGGCCTCTTTCCCATTGCTATAATGAGCGTCCCATCTTCTTAAATGAGAGATGTAATGGAAACCCATTGCATCTTCCATCATCGTCATCATCATGTTGTTCTTGTTGTGTTTGTTATACATTTCCAACCCACAGAATGCCTGTAGGCCCTAGCATTTTCTATGGGCCGAGGCAATCCACCCTGCTTCAATGGTCGATCTCTAGGAGAATGATGTTGGGTGGCCGAAACCGGTTCTGTTACACGCTTCCTGAATATGGGCGTGTTCCGGATTGTTATGAGGTTCCGTTTTCTGTAAGTGAGGGTAGGACTTGTCATTGTAGTGAGGGAAGGAGATATAGAAGATGTTGTTTGATTTCTGATAGTGATTGTGAATTTGACAAATCGGATGGATTTGATGAGGAGGACATTGCTGAGGCAATGATCAGTTTGATAAGAGAGGGTTTTGGAAGCCAGGAAAAAATTAAGTCATCTAAGAGAGTGGAAGTGGGAAACCAAAGAAAGTGCGGAACAAAAGGGAGGAATTTAAGTTCATCGAGACGAGTAGAACTGGAGAAAAAGGTTAGAAGAGGTGTTGAGGACAAAAGGTTAAGTTCATTTGACAAGATAAGAGTAGATAGGGAAAGAGAGAGTAACAGTCAACGAGAAAGAGAAGAGAGAAAAAGCAATAAGTTTGGTTCTTTAAATAGTAAACATAACAATAAAGTTGGATCAATGGCAGTTGAGTTGAGGAAAGATGGATATAGATTGAATGGTGATCAGTTAGTTAACTCAAGAGCTGATAGTCAGAATTTAAGAAAAGAAGGGTCTACTTGTTCATCTTATTATTCACTCTCCTCCTCTGGGGATATTGAGAGTGATGCTGAAGTTGAAGACAAGAATGTGCAATTCGTTGAAGAATCGTCCAGTGGGTACAGATATGACACTGTGAGTGACGTGGGAGAAAAATTAGATGGGCAGATGAAGGAAGCGTTCAAGAGGCAAGCAGACGATGAGGAGGGGCAAGAAGAGGAATCAGTGCTCCGCGATACTACAGTTGGGAATAGTGCCGATTGGCAATTGAGGAAGAACTCAGAGAACAAACTTAGTGAAATATCAACAACAGTAACATCCTCCGTAAGTGGAACCTCTGATATGAACTCAAGATTGTCAAGGGCCAGGGAAAGTGGTTGTGTAAGTACTTCAAGTTCCAAGAAGAAGTTTGTTGACAAGAAAGAGGAATTGAAAATGGCCGTGACTTTGAATGAGCAATCAAAACAATATGATGTATCAGGTAAGAAAGTTGGTGGTGTGTTTATAAATGAAGGGAAAAAACTTGCAGAAGTATCAAAAATAAGCCAAAGTAATGCAAAAGAAATTTCTCGTTCTCATAAAAGACTAACCATCAAGAATGAAAACCTAGAATTTGATGCAAATCTCATCGAGAAAGCTAGCAACAACAATCATGAAACTGGTCGTCCTGTCCTTCAAGAAAAGAATTCAAGACGAAGTTTGTCATTTCAACAACTTTTGGGAGTTCCAGAAAATAGGAAAACTGAGAGAGAAAGGTTCTCTCATCAGACAAGCCAGTCTGATGCAAGTGAAAGTACAGGTCTCCACCTAACTTCTAATCAAGAGGTTGAAGAAAGACATCATCAAATAGGAGATCATCCCATTGGAGAAGTGGATTCGAGACAAAAGGTTCTTCATCTTGGTGTTATACCAGTAATCAAAGACAGCAATACCAACACCTCTGTTTCGAGTTCTGAAATTAGAACACAAAATGAGGAACAAAATGCAGCATCAGTTAATGCATCAAATTTTGTGGCTAAAGACATAAAGTCTTCGACAGATGAGAAAGCTTCTAAGAGAGTTATTTCCAGAAAAGGTTCCCGAGATGCCTCTAACATTTCAGTGGTTCATGGTGCCAATAAAATATCTGCTACACATTCTGAAAAAACATTTGAAAATAGAATCTTCAAGCAAGAAACTAATAAATCATCAGTGGAAAAAACTGTCAAGGAAACCATAATAAGACATGGTCAAAATAATGATCGTGTGGTGCAAACTGAATCGGGAAAAGAGGCTAAAATTCATGTAGAAAAATCAAAAGTTCAAGGATCCATTAATTTAAGTTCCCAAAGTAGTTATCAAGAGATTGGTGTGAATAATGAAGAAAATAAAAGGTCACAGGCAGTGTTAATGCCTCCTCCATCTCAGCTTGTAGCTAGAGATCCATTGCGAATAGATTCTACTAGTGAACCGGCAAGCCAAGTAGTTTGCAGAAGAACATCAGGAAGCAGTTCAGGTGCTTCTTACAAGCAGTCAGGAGGAAGTCCAGCTTTGGGCCGTAAATCCTACCGAGGAAGTGAGGCAGATGCCAGTATTGAGGATTCTGTATACCTTATCGCCCCTGATGATAGTCTAGGTTCAGCTGACCGTTTAGAGAGATCATCTGCACAGTTTGTTGGTGAGTTCATGGAGAAATCCAGGAATGAACTCTTGATTTCTGAAACCCATATAGAGAAAAATATCTCTGAGGTTGATTTACTACATGAAGAGAAGCATGGAGAATATAATTTGGTAGATTATCAAATGAAGGACCATGACTCAAGGCTCTCGTCTGGGAGTTCTGGAACCAAGGGTCCTTCTGATGAAATGTGGCATGTGATGGACTCAACTATCGAGCAGCGTCCCAAAACTGATGATCCTGAGATTAGTGCACACAGTGAGAATGCAATTGTCAAGAGAAGTGGCAAATCCTTGTGGAATGTCATTTCAGACATAGTTCGTCTCCGTTGGAATTCACGTGCTGAAACCTCTGAGTCAGCTTTAAGATCAGGTGGAAGGAATTCACCAAACGAGTCTGCTAGTAACGAGACCTGGTTTTCTGGCCGTGAACATGAGGAGACTGATAATAAGAAAATGGAAAGAACCACAGTTTCTGAATTCACTTCTTTGGATCAGTTGGAAGAACCAAATCCTTCTGCCCAAGGCCAAGATTTATCTGATGATAAGAAAGAAAAAAGTAAATACTATGAAGTAGATACTCCATCTTCCCCAAATATAATGGAGACCAAGCCATTAGGTGGGACTTTGTTAGTTTCTGGAGAAGCGATCTTAACAGATGGTAGGAAGGTTGACGTTATTTCTTCTGGTTTGGATATGGAACAGTCATCATTACCACTATCTACCCAAGGCATAAGAGGATCTTCCATTATTCAAGAAATGTCTCATAGTGGTAAAAGTGATGCCTTTGCAAGCAGCTCTGCAGATCAGTTGGGGCATTCTTCTGATGCTACAATATCAGAGATATCAACAACTGGAACCAAGGATGGGGAAGTGAAACAAAGGAAGCTTCAAAGAAACAAGCAAGTTCTAAAAGATCGGTTTGATGAATGGGAAGAAGCATACCTAGTTGAAACTGAGCAGCGAAAAATTGATGAAATGTTTATGAGGGAAGCGCTAGCTGAAGCCAAGAAGGCTGCTGATACTTGGGAAGTTCCTGTTGGAGCAGTGTTGGTGAAACATGGAAAAATTATTGCTCGTGGCTGCAACCTGGTCGAAGAGTTGCGAGATTCCACAGCCCATGCCGAAATGATTTGTATTCGGGAGGCTTCAAAGCAATTAAAGACATGGAGGCTTGCTGAGACAACTCTTTACGTGACACTTGAGCCATGCCCTATGTGTGCTGGAGCAATACTACAAGCACGAATCGAAAATCTTGTGTGGGGAGCACCAAATAAGCTTCTTGGAGCTGATGGCAGCTGGATCAAACTTTTTCCTGATGGAGAGGGAAATGTCTCAGAACAGTCTGAGAAGCCTGCTGCACCCGTCCACCCTTTCCACCCGAAAATGACGATCCGACGAGGTGTATTGGCATCAGAATGTGCAGATGTAATGCAACAATTCTTTCAGCTAAGGAGAAGAAAGAAGCAAAAGAAAGAAAACACTCCACCTCTAGCCATTACGCATCATCCATCAAAATTTATTACCAAGATGCATAACATTTTCCACATATTGTTCTGTTTGTAA 4059 40.75 MYNTYVSSTVYSIRSKGPLSHCYNERPIFLNERCNGNPLHLPSSSSSCCSCCVCYTFPTHRMPVGPSIFYGPRQSTLLQWSISRRMMLGGRNRFCYTLPEYGRVPDCYEVPFSVSEGRTCHCSEGRRYRRCCLISDSDCEFDKSDGFDEEDIAEAMISLIREGFGSQEKIKSSKRVEVGNQRKCGTKGRNLSSSRRVELEKKVRRGVEDKRLSSFDKIRVDRERESNSQREREERKSNKFGSLNSKHNNKVGSMAVELRKDGYRLNGDQLVNSRADSQNLRKEGSTCSSYYSLSSSGDIESDAEVEDKNVQFVEESSSGYRYDTVSDVGEKLDGQMKEAFKRQADDEEGQEEESVLRDTTVGNSADWQLRKNSENKLSEISTTVTSSVSGTSDMNSRLSRARESGCVSTSSSKKKFVDKKEELKMAVTLNEQSKQYDVSGKKVGGVFINEGKKLAEVSKISQSNAKEISRSHKRLTIKNENLEFDANLIEKASNNNHETGRPVLQEKNSRRSLSFQQLLGVPENRKTERERFSHQTSQSDASESTGLHLTSNQEVEERHHQIGDHPIGEVDSRQKVLHLGVIPVIKDSNTNTSVSSSEIRTQNEEQNAASVNASNFVAKDIKSSTDEKASKRVISRKGSRDASNISVVHGANKISATHSEKTFENRIFKQETNKSSVEKTVKETIIRHGQNNDRVVQTESGKEAKIHVEKSKVQGSINLSSQSSYQEIGVNNEENKRSQAVLMPPPSQLVARDPLRIDSTSEPASQVVCRRTSGSSSGASYKQSGGSPALGRKSYRGSEADASIEDSVYLIAPDDSLGSADRLERSSAQFVGEFMEKSRNELLISETHIEKNISEVDLLHEEKHGEYNLVDYQMKDHDSRLSSGSSGTKGPSDEMWHVMDSTIEQRPKTDDPEISAHSENAIVKRSGKSLWNVISDIVRLRWNSRAETSESALRSGGRNSPNESASNETWFSGREHEETDNKKMERTTVSEFTSLDQLEEPNPSAQGQDLSDDKKEKSKYYEVDTPSSPNIMETKPLGGTLLVSGEAILTDGRKVDVISSGLDMEQSSLPLSTQGIRGSSIIQEMSHSGKSDAFASSSADQLGHSSDATISEISTTGTKDGEVKQRKLQRNKQVLKDRFDEWEEAYLVETEQRKIDEMFMREALAEAKKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMICIREASKQLKTWRLAETTLYVTLEPCPMCAGAILQARIENLVWGAPNKLLGADGSWIKLFPDGEGNVSEQSEKPAAPVHPFHPKMTIRRGVLASECADVMQQFFQLRRRKKQKKENTPPLAITHHPSKFITKMHNIFHILFCL 1352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3106099 3111129 - Lsi04G003070.1 Lsi04g00307 660356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 491 547 - -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 757 798 - -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 946 1036 - -
Lsi04g00307 1352 CDD nucleoside_deaminase 1172 1266 - -
Lsi04g00307 1352 Hamap tRNA-specific adenosine deaminase [tadA]. 1160 1317 IPR028883 GO:0002100|GO:0008251
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 386 405 - -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 946 969 - -
Lsi04g00307 1352 Coils Coil 1125 1145 - -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 1084 1118 - -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 220 251 - -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 220 241 - -
Lsi04g00307 1352 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 905 1342 - -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 339 362 - -
Lsi04g00307 1352 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1154 1276 IPR002125 -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 170 197 - -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 1084 1124 - -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 970 989 - -
Lsi04g00307 1352 Pfam MafB19-like deaminase 1157 1256 IPR028883 GO:0002100|GO:0008251
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 759 784 - -
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 491 521 - -
Lsi04g00307 1352 Gene3D Cytidine Deaminase, domain 2 1143 1329 - -
Lsi04g00307 1352 SUPERFAMILY Cytidine deaminase-like 1139 1319 IPR016193 GO:0003824
Lsi04g00307 1352 MobiDBLite consensus disorder prediction 990 1008 - -
Lsi04g00307 1352 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 905 1342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00307 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - csv:101215576 2239.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00307 Lsi-Chr4:3106099 Lsi06g01205 Lsi-Chr6:22422854 4.33E-15 dispersed
Lsi09g01560 Lsi-Chr9:23726486 Lsi04g00307 Lsi-Chr4:3106099 8.30E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00307 Lsi_Chr04 FPKM 4.469459 4.890923 2.944894 2.342199 10.798738 6.651752 8.454329 3.548819 4.218395 4.545339