Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00308 ATGAGCGGCGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCATGTGGGAAAGCTTCTTTAAAGGATGATCATTCACAACTTGGGGGTCCGGGGTTTTCTCGAGTTGTTTTCTGTAATGAACCAGAGTGTTTTGAGGCAGAAATTCGTAACTACACAGACAATTATATTAGTACAACCAAGTATACTCTAGCTAATTTCCTGCCTAAGTCATTGTTTGAGCAATTCAGGAGGGTGGCCAATTTCTATTTCTTAGTCAGTGGAATCCTTGCTTTTACTCCTCTTGCTCCTTACACGGCTGTCAGCGCGATTATCCCTCTTATTCTTGTCATTTCGGCCACAATGATCAAAGAAGGGATTGAGGATTGGAGGCGGAAGAAACAGGATATTGAGGTTAACAATAGAAAGGTTAAAGTGCATCAAGGTGATGGAGTTTTTGCTTATACAGAGTGGAAGAATCTGAGGGTGGGTAATATTGTGAGAGTGGAGAAGGATGAATTCTTTCCAGCAGATATTATCTTGCTTTCATCCAGTTATGAGGATGCAATTTGCTATGTTGAGACAATGAACCTTGATGGCGAGACAAATTTGAAACTAAAACAAGCATTGGAGGTGACTTCGCATATGCACGAGGATTCTATCTTCAACAATTTTAAGGCTATCATAAAATGCGAGGATCCAAATGCAAATTTATACAGTTTTGTTGGTAGTATGGAGTTGGAAGAGCAACAATATCCTCTATCTCCTCAACAACTACTCCTTCGAGACTCTAAACTCCGGAATACAGATTATATATATGGGGTGGTTGTCTTTACTGGTCGTGACACAAAGGTTATTCAAAATTCTACTGATCCACCTTCAAAGAGAAGCAAAGTTGAGAGAAAAATGGATAAAATTATATATATTTTGTTCTGTCTTCTATTTTTGCTTGCTCTTGTAGGATCTATAATTTTTGGCCTTGTGACTGACGATGATTTGGAAAATGGGAGAATGAAGAGATGGTATCTCAGGCCTGATGATGCCAAAATTTTCTTTGATCCAAAAAGGGCTCCAATAGCTGCAATTTTCCATTTTCTTACGGCACTGATGTTATATAACTACTTCATTCCTATCTCACTGTATGTATCAATAGAAATTGTCAAAGTTCTTCAGAGCATATTTATCAATCAAGATATTAATATGTATTATGAAGAAGCTGATAAACCTGCTCGTGCTCGCACCTCAAATTTGAATGAAGAACTTGGTCAAGTCGATACAATACTCTCTGACAAGACTGGAACTCTGACCTGTAATTCAATGGAGTTCATTAAGTGTTCTATAGCAGGGAGGGCTTATGGGCAGGGTTTCACTGAGGTAGAAAGGGCTATAGGTAGACAAAAGGATCCACCCCTGCATGAAGCTGTAAATGGGGGGAATCACCATGAGGATGCCAAGGATAAAACTTCACATATCAAGGGCTTTAATTTTAAGGATGATAGGATTATGAATGGGAATTGGGTTAACGAACCTCATGCAAATGTCATTCAAATGTTTTTCCGTCTTCTTGCAACTTGTCATACGGCAATACCTGAAATCAATGAGGACAATGGAGAGGTTTCCTACGAGGCTGAATCCCCAGATGAAGCAGCATTTGTAATTGCAGCTAGAGAACTCGGCTTTGAGTTCTACAAAAGAACACAGACAAGCATATCACTGCATGAGTTTGATCCTTCATTAGGCAAGAAAGTTGATAGGTCATATAAACTGCTGCATGTTTTGGAGTTTAATAGCTCAAGGAAGCGGATGTCTGTCATAGTAAGAGATGAAGAGGATAAAATATTATTATTCTGTAAAGGTGCAGACAGTATCATGTTTGAAAGGCTTGGAAAGAATGGAAGGGAGTTTGAAGAGGAGACAAAGGAACATGTCAATGAGTATGCTGATGCAGGATTGAGGACTTTGATACTTGCCTGTCGCGAGCTTGAAGAGGAAGAATACAGAGAATTTGATGACAAGTTCACTAAGGCCAAAAGTTCAGTTAGTGCAGATCGAGAATCACTGATTGAGAAAGTAACTGACAAAATCGAGAGGAATCTAATTCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTTCAAAATGGGGTTCCTGAGTGCATTGACAGGCTTGCTCAGGCTGGAATTAAGATTTGGGTTTTGACCGGGGACAAAATGGAGACTGCCATTAATATTGGTTTTGCCTGTAGCTTACTAAGACAAGATATGAAGCAGATTGTTATTACTCTGGAGACATCAGAAATTCAGGCGCTAGAAAAGACAGGGGATAAGGCTTCTATCATGAAGGCGTCAATGCAATGCGTCCTCGATCAAATTACTCGAGGGAGAGCTCAGATCACCTCACCAAGTGGGTTATCTGAAGCATTTGCATTAATTATTGATGGAAAATCACTTTCTTATGCTTTAGAGGACAGTATGAAGGCATTGTTTCTTGAGGTAACAAGGTTAGTTAAATCAGGAACACGGAAAACAACTTTAGCTATTGGCGATGGTGCCAATGATGTAGGAATGCTTCAAGAAGCGGACATTGGAGTTGGAATTAGTGGTGCGGAAGGAATGCAGGCTGTTATGTCAAGTGATGTTGCAATAGCCCAGTTTAAATATTTAGAGCACCTGCTTCTTGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACTTTTGGTTTTACCATATTCCTATACGAAGCATTCACATCATTCTCTGGGCAACCTGTATATAATGATTGGTTTTTATCACTTTACAATGTTTTCTTCTCGTCGCTTCCAGTGGTAGCTTTGGGAGTTTTTGATCAGGATGTATCTGCAAGACTCTGCCTCCAGTTTCCTCTATTATACCAACAAGGAGTGCAGAATGTTCTTTTCAGCTGGCTCCGTATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCCGTGATCATTTTCTTCCTATGCACTAGAGCCCTTGGGCATCAGGCGTTCAACTCCGACGGTAAAACTGCAGGGCGAGATATTCTGGGTGCAGCAATGTACTCTTGTGTTGTTTGGGTTGTGAACTTGCAAATGGCGCTTGCTGTTAGTTACTTCACCTTGATACAGCATCTTTTCATCTGGGGTTCAATTTCGATCTGGTACATTTTTCTCCTGATCTATGGGTCAATGACCCCCACCTTTTCAACCAATGCTTACAAGATTTTCATCGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTTGTGCTTCTATTTGTGGTGATCACAACACTCATTCCTTACTTCTCCTACTCAGCTATACAGATGAGGTTCCTTCCCATGTATCATCAATTGATTTTATGGATTAGGAATGAAGGGCAACTAGACAACAAAGAGTACTGTGATATTTTGCGGAACACTTCCACTTTCCGATCGACGAGCGTGGGTTCCACAGCACGGGTAGCAGCCAAACGGAGCAAATTAAAAGAGAGAAAACAGAGTGCTACTTGA 3531 40.61 MSGGRRRKLHFSKIYSFACGKASLKDDHSQLGGPGFSRVVFCNEPECFEAEIRNYTDNYISTTKYTLANFLPKSLFEQFRRVANFYFLVSGILAFTPLAPYTAVSAIIPLILVISATMIKEGIEDWRRKKQDIEVNNRKVKVHQGDGVFAYTEWKNLRVGNIVRVEKDEFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHMHEDSIFNNFKAIIKCEDPNANLYSFVGSMELEEQQYPLSPQQLLLRDSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVERKMDKIIYILFCLLFLLALVGSIIFGLVTDDDLENGRMKRWYLRPDDAKIFFDPKRAPIAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGRAYGQGFTEVERAIGRQKDPPLHEAVNGGNHHEDAKDKTSHIKGFNFKDDRIMNGNWVNEPHANVIQMFFRLLATCHTAIPEINEDNGEVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPSLGKKVDRSYKLLHVLEFNSSRKRMSVIVRDEEDKILLFCKGADSIMFERLGKNGREFEEETKEHVNEYADAGLRTLILACRELEEEEYREFDDKFTKAKSSVSADRESLIEKVTDKIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGFACSLLRQDMKQIVITLETSEIQALEKTGDKASIMKASMQCVLDQITRGRAQITSPSGLSEAFALIIDGKSLSYALEDSMKALFLEVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLEHLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQPVYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVLFSWLRILSWMFNGLCSAVIIFFLCTRALGHQAFNSDGKTAGRDILGAAMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYGSMTPTFSTNAYKIFIEVLAPGPSYWLVLLFVVITTLIPYFSYSAIQMRFLPMYHQLILWIRNEGQLDNKEYCDILRNTSTFRSTSVGSTARVAAKRSKLKERKQSAT 1176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3125165 3133808 + Lsi04G003080.1 Lsi04g00308 660357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00308 1176 Pfam Cation transport ATPase (P-type) 520 625 - -
Lsi04g00308 1176 PRINTS P-type cation-transporting ATPase superfamily signature 842 861 - -
Lsi04g00308 1176 PRINTS P-type cation-transporting ATPase superfamily signature 721 731 - -
Lsi04g00308 1176 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Lsi04g00308 1176 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Lsi04g00308 1176 Gene3D - 115 286 - -
Lsi04g00308 1176 Pfam Phospholipid-translocating ATPase N-terminal 40 106 IPR032631 -
Lsi04g00308 1176 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1120 IPR023298 -
Lsi04g00308 1176 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1170 - -
Lsi04g00308 1176 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1126 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lsi04g00308 1176 Gene3D - 471 701 IPR023299 GO:0000166
Lsi04g00308 1176 SFLD p-type atpase 408 893 IPR044492 -
Lsi04g00308 1176 SFLD Haloacid Dehalogenase 408 893 - -
Lsi04g00308 1176 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1170 - -
Lsi04g00308 1176 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 666 IPR023299 GO:0000166
Lsi04g00308 1176 Pfam Phospholipid-translocating P-type ATPase C-terminal 870 1120 IPR032630 -
Lsi04g00308 1176 SUPERFAMILY Calcium ATPase, transduction domain A 139 283 IPR008250 -
Lsi04g00308 1176 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 835 924 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi04g00308 1176 CDD P-type_ATPase_APLT_Dnf-like 57 1002 - -
Lsi04g00308 1176 Gene3D - 702 890 IPR023214 -
Lsi04g00308 1176 Pfam E1-E2 ATPase 136 359 - -
Lsi04g00308 1176 SUPERFAMILY HAD-like 412 886 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00308 Lsi-Chr4:3125165 Lsi08g00624 Lsi-Chr8:14590144 0 dispersed
Lsi01g01619 Lsi-Chr1:14561706 Lsi04g00308 Lsi-Chr4:3125165 0 transposed
Lsi02g02923 Lsi-Chr2:35435123 Lsi04g00308 Lsi-Chr4:3125165 0 transposed
Lsi04g00495 Lsi-Chr4:4582608 Lsi04g00308 Lsi-Chr4:3125165 0 transposed
Lsi09g01091 Lsi-Chr9:17328856 Lsi04g00308 Lsi-Chr4:3125165 0 transposed
Lsi02g00155 Lsi-Chr2:1273764 Lsi04g00308 Lsi-Chr4:3125165 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00308 K01530 - csv:101207148 2174.44