Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00311 ATGAACATGTATGACAAGTATTTGCGGAAGAAGGCCCTGTCAGTTGTTTATTCTTGTATATCCATGTTAGGGGTGATGAGTGGTGTGTATAAGGAAGAAACCAGTGCGTTGGTAATACCCATGCTAAAACCATGGATGGAACAGTTCTCTATAATATTAGGTCACCCCGTGCAATCTGAAGATCCCGATGACTGGAGCATGAGAATGGAGGTCTTAAAGTGCATGAACCAGTTCTTTCAGAATTTCCCTAGTTTTGCAGAAAGTGGTATTACAATTGTTTTGCAATCAGTATGGCAGACATTTGTGTCATCTCTCGAAGTATATGTACGATCATCCATTGAAGGTGTAGGAGACCCATATGATGGAAGCTATGATTCGGATGGTGCTGACAAAAGCCTCGATTCTTTTGTCATCCAGTTGTTCGAATTTCTTTTAACCATAGTTGGAAGTTCAAAACTGGTGAAGGTCGTGAAGAACAATCTAGGGGAGCTGGTATATTACACAATTGATTTTCTACAAATTACGGAGCAACAGATTCATTTGTGGTCAATGGATTCCAATCAATTTGTTGCAGACGAGGATGATGGCACCTTTAGCTGTCGTGTTTCAGGTGCACTGTTACTTGAAGAAATTGTTGGTAATTGTGGTCTAGATGGAATCAATGCCATCATAGATGCTGCCAAAAGTCGCTTCAGTGAGTCAAAAAGAGAGAGAGCTTCTGGTTCTTCAGTTTGGTGGAGAATCAGGGAGGCTATTCTATTCGCTTTAGCTTCATTGGCAGAACAGTTGATTGAAGTAGAGCCTTCTGGAGTGACAAGCGTTGGTTTGGAAAGTTTTTTGGAGGAATTATTGACTGAAGAAATGACTATAGGTCCTCATGAATGTCCCTTCCTTTATGCTCGTATATTCACGTCAGTTGCCAAGTTCTCCTCTATGGCATCAGATGAAACTTTGCACTTGGTACTTGACACCCTGCAAGCTGCAGTTAAGGCCGGTGGTGAATTGTCCGCTTCAATAGAGCCCATTCTCTCTCCTGTGATTCTTAAAATGTGGGCATCGCATGTCTCTGATCCTTTTATCAGCATTGATTTAATTGAGGTTCTCGAGGCAATAAAAAATTCTCCTGGTTGTATCCGCTCGTTAGCTTCACGAATTTTGCCATATTTAGTGCCTATACTAGACAAACCCCAACATCAGCCAGATGGGTTAGTACCTGGATCATTAGATCTGTTGACAATGCTTAATGCTCCAATAGATGTTGTGAAAGCAGCATATGATGCTTGTTTTGATGCTGTTGTCAGGATAATCCTTCAAACTGATGATCATAGTGAATTGCAGAATGCTACGGAATCTCTAGCAGCTTTTGTAGCAGGGGGGAAGCAAGAAATTCTTACTTGGGGTTCTGGATTTACAATGAAAAGTTTGCTTGCTGCAGCTTCGAGGCTCTTAGACCCTAAGATGGAAAGTTCTGGATCATTCTTCGTTGGAACGTTTATTCTGCAATTGATATTGCATCTTCCATCACAAATGGCCCAACATCTTCCTGACCTGGTTGCTGCACTAGTGAGGCGAATGCAATCTGTTCAAATAGCTGGAGTACGAAGCTCGTTGATACTTATTTTTGCTCGACTGGGTGGAAAGATAATTCAAATTTCACAAAGTGAATGTTCGATCCAAGTTCACATGAGTGCCCCTAATATTCAACAGCTTATCGATTTGCTAGTTTCAATACCTGCTGAAGGCAATGATAATTCATTTGTTTATTTGATGTCAGAATGGACGAAGTTGCAAGCTGAGATTCAGGGTGCTTATCAAATAAAAGTTACTACTACTGCATTGGCCCTGTTGCTGTCGACACAAAACCCTCACTTAGCACAAATTAGTGTTCGAGGACAAATTACTAAGCTTTCTGCAGGGATAACCACTCGATCAAAAGGAAAATTAGCTCCGGATCAGTGGACAGTTATTCCACTTCCAGCAAAGATATTATCTTTGTTGGCTGATGCACTGATTGAAATCCAAGAACAAGTTTCGGTAGATGATCAGGATAGCGAATGGGAGGATGCCGAGGCTGATGATGTTTCAAATGACGAAAACCTGCTTCATTCGGTCAATGCTACATCAGTAGGTAGACATACCCATGAATATCTTCAAGTGATGGCAAAAGTATACGATGGGGAAGGTGATGAGTATGAAGATGACCTACTTACTGTTTCTGATCCTCTTAATCAGATTAACTTGGCGAAATACCTGGTGGACTTCTTTATGAACTTGTATCAGAATGACAGACAGAACTTTGATAATCTCTTCAAGAGTCTGTTCGAAGCATGTGAAAAGGCTGTTCAAGTGGTAGTCACTGTGGACAAGGAGTTTGCGATCTTTCAGGGGGTAGACCCACGTGTAGATAAGAAAGCTTGGGTTTTCCCGAAAATGGCGGCAGTATCACCGGCGCCTAATTCATCTCCGTCGCCAGCTTCTCCCTCCACTCCATCTCCGCCTCCCGTCACATCTAATTCCCCACCCAGTACTCCGTCACCGTCGCCGCCGCAACAATCGCCTCCTCCGAACCCGTCTGACTCCGTGAATCCCACTTCATCTCCTCCGCCGCCGGCTCGTCAACCATCTTCTACTTCACCTCCACCTGCATCTGAAACTCCGCCGCCATCAACACCCGCATTGTCTCCTCCGCCGCCTCGGACGGTTCCGCCGGCAACTCCACCACCAACTCCGTCCAATGCTCCACCCCCATCAACACCGGACCCTCCTCCACCACCATCAGCAACCCCACCAGTAAGCGCCGCTCCACCAACGCCATCTAATCCCCCACCAAATTCATCTCCACCTCCTGCAGCACAGCCTCCTCAATCCCCTCCTCCACAATCATCAAAACCACCTGAAAACTCCCCTCCGCCGCCAACCCCACCCCCACCAGCAAGCCCGCCGGATAATCCATCGCCGCCGCCACAACCCACAAACCCACCTGAGAATTCACCTCCTACGCCACCATCAGCACCTCCAGAAACGTCACCTCCCTCCCCAGCATCAATACCTCCACCCCCGAGGCTTACTCCTCCTCCCGGTGAGCCCTCACCTTCAAGTCCTCCTCCCAAGTCATCACCGCCCCCATCTCCTGCACCACCGCCGCCGTCACGTCTTTCTCCTCCATTACCGTCTACACCCCCAACATTGCCGTCAGGAAATCGTACGGACGATGGTTCTGGTCCTAATAATGGAGCAAACTCGAAATCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATCGCCATTGGTGTAGTGGCAGGAATTGTAGTTCTTTCCATAATTGGGTTTGTTGTATGGTACATCAGGAAGCCAAGGAAAAATGATTCTGGGCATGGAGGTTACATTATGCCATCCTCTCTGGGCTCCTCTCCTAAGTCGGAAACATCCCTTATGAAGGTCCATTCCACAGTTCATCAAGACATACATGCCACTGGCAGTGGCAGTGGCAGTGGTGGAATATACACTCCAAAAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATATGAAGAACTCTTCAAAGCAACAAATGCATTTTCTGCACAGAACCTTTTGGGAGAAGGCGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGACTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCTCGAATTCAAAGCTGAAGTTGAGATTATTGGTCGTGTACACCACCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCATCTTCATCTTAAAGGGGATGGCAAGCTCGTTCTGGAATGGGCAAAGCGCATTAAGATCGCAGCTGGTGCAGCCCGGGGAATTGCTTATCTTCATGAAGACTGCCATCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGACGAAAATTTTGAAGCTCGGGTTTCAGACTTTGGGCTCGCCAAATTAGCTCTCGATGAACAAACTCATATAACAACCCGTGTTGTGGGAACTTTTGGTTATGTTGCCCCTGAATATGCATCGAGTGGAAAGTTAACCGAGAGATCAGATGTATATTCTTTTGGAGTTGTACTTCTTGAGTTGATTACTGGTCGGAAGGCTGTGGATGCATCCCAACCAATGGGGGACGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTCGACAGCCAAGATTTCGAAAAATTGGTTGACCCAAGGCTTGAAAGGAACTATGTCGAGAGTGAAATGTTGGGGATGATAGGAATAGCTGCTGCTTGCGTGCGCCACGCGTCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTATCCACTGCAGATTTAAGTAATGGAATGAGATTTGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAATCTGCCGAAATTAGATTTTTCCGAATGCTGGCATTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA 4578 45.85 MNMYDKYLRKKALSVVYSCISMLGVMSGVYKEETSALVIPMLKPWMEQFSIILGHPVQSEDPDDWSMRMEVLKCMNQFFQNFPSFAESGITIVLQSVWQTFVSSLEVYVRSSIEGVGDPYDGSYDSDGADKSLDSFVIQLFEFLLTIVGSSKLVKVVKNNLGELVYYTIDFLQITEQQIHLWSMDSNQFVADEDDGTFSCRVSGALLLEEIVGNCGLDGINAIIDAAKSRFSESKRERASGSSVWWRIREAILFALASLAEQLIEVEPSGVTSVGLESFLEELLTEEMTIGPHECPFLYARIFTSVAKFSSMASDETLHLVLDTLQAAVKAGGELSASIEPILSPVILKMWASHVSDPFISIDLIEVLEAIKNSPGCIRSLASRILPYLVPILDKPQHQPDGLVPGSLDLLTMLNAPIDVVKAAYDACFDAVVRIILQTDDHSELQNATESLAAFVAGGKQEILTWGSGFTMKSLLAAASRLLDPKMESSGSFFVGTFILQLILHLPSQMAQHLPDLVAALVRRMQSVQIAGVRSSLILIFARLGGKIIQISQSECSIQVHMSAPNIQQLIDLLVSIPAEGNDNSFVYLMSEWTKLQAEIQGAYQIKVTTTALALLLSTQNPHLAQISVRGQITKLSAGITTRSKGKLAPDQWTVIPLPAKILSLLADALIEIQEQVSVDDQDSEWEDAEADDVSNDENLLHSVNATSVGRHTHEYLQVMAKVYDGEGDEYEDDLLTVSDPLNQINLAKYLVDFFMNLYQNDRQNFDNLFKSLFEACEKAVQVVVTVDKEFAIFQGVDPRVDKKAWVFPKMAAVSPAPNSSPSPASPSTPSPPPVTSNSPPSTPSPSPPQQSPPPNPSDSVNPTSSPPPPARQPSSTSPPPASETPPPSTPALSPPPPRTVPPATPPPTPSNAPPPSTPDPPPPPSATPPVSAAPPTPSNPPPNSSPPPAAQPPQSPPPQSSKPPENSPPPPTPPPPASPPDNPSPPPQPTNPPENSPPTPPSAPPETSPPSPASIPPPPRLTPPPGEPSPSSPPPKSSPPPSPAPPPPSRLSPPLPSTPPTLPSGNRTDDGSGPNNGANSKSNSNGGISSGGVIAIGVVAGIVVLSIIGFVVWYIRKPRKNDSGHGGYIMPSSLGSSPKSETSLMKVHSTVHQDIHATGSGSGSGGIYTPKELGGLGSSRPLFTYEELFKATNAFSAQNLLGEGGFGSVYKGYLPDGRLVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGDGKLVLEWAKRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGDESLVEWARPLLNHALDSQDFEKLVDPRLERNYVESEMLGMIGIAAACVRHASAKRPQMGQVVRAFDSLSTADLSNGMRFGESQAFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA 1525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3137175 3162998 - Lsi04G003110.1 Lsi04g00311 660360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00311 1525 PRINTS Proline rich extensin signature 833 849 - -
Lsi04g00311 1525 PRINTS Proline rich extensin signature 851 868 - -
Lsi04g00311 1525 PRINTS Proline rich extensin signature 811 832 - -
Lsi04g00311 1525 PRINTS Proline rich extensin signature 870 895 - -
Lsi04g00311 1525 MobiDBLite consensus disorder prediction 813 1089 - -
Lsi04g00311 1525 Gene3D Transferase(Phosphotransferase) domain 1 1272 1488 - -
Lsi04g00311 1525 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 937 1518 - -
Lsi04g00311 1525 Gene3D Phosphorylase Kinase; domain 1 1173 1271 - -
Lsi04g00311 1525 SUPERFAMILY ARM repeat 14 766 IPR016024 -
Lsi04g00311 1525 MobiDBLite consensus disorder prediction 1063 1089 - -
Lsi04g00311 1525 SUPERFAMILY Protein kinase-like (PK-like) 1179 1469 IPR011009 -
Lsi04g00311 1525 MobiDBLite consensus disorder prediction 820 1062 - -
Lsi04g00311 1525 SMART serkin_6 1196 1444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00311 1525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1318 1330 IPR008271 GO:0004672|GO:0006468
Lsi04g00311 1525 CDD STKc_IRAK 1202 1474 - -
Lsi04g00311 1525 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 937 1518 - -
Lsi04g00311 1525 ProSiteProfiles Protein kinase domain profile. 1196 1474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00311 1525 ProSitePatterns Protein kinases ATP-binding region signature. 1202 1224 IPR017441 GO:0005524
Lsi04g00311 1525 Pfam Protein kinase domain 1198 1405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00311 1525 Gene3D - 2 785 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00311 Lsi-Chr4:3137175 Lsi03g00221 Lsi-Chr3:2790686 1.14E-167 dispersed
Lsi11g00260 Lsi-Chr11:2621815 Lsi04g00311 Lsi-Chr4:3137175 2.72E-133 dispersed
Lsi04g00311 Lsi-Chr4:3137175 Lsi06g00871 Lsi-Chr6:18218127 5.12E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83555 PF00069 Pkinase 1.10E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00311 K20224 - vvi:100268066 990.334