Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00314 ATGTATCTGACGAGGCCACTTTCTCTGTATAGAGACTCATCTTCTTCTTCTTCCTCTTCGGCTTCGGGTGAGGGTCCAAATACAGGCGTTTTAGTGATAGAAGACGAAGCTTCAGAATCGAGATGGTTTTTTGGATTGATTAAGGATACGCGTGTGAAGGTGCCGCCATTCCCTCAAAACAAGCTACTGGAGCTTCGATATTTGAAACATAATGCTGCAGACAGGCGAAGGCACTACTATCCAACTGATTACTTTCACGCAATGCTAATTCCAGTTCTGAATCAGCCTTCCAATTCCAACCAATATTATGTCATTAATTCCCGTGGCAAAACTAAAGGGCGAAGGCACTACTATCCAACTGATTACTTTCACGCAATGCTAATTCCAGTTCTGAATCAGCCTTCCAATTCCAACCAATATTATGTCATTAATTCCCGTGGCAAAACTAAAGGGCTAGCGTGTACAAGTTCAAAGGAAGACGACATGACCAGCTGTTGTTGCTTCAATTTTATTGATGATATACCACCACAACTCTTCGACCCAAGAAATCCTTATCAACAATTCCAAATTACCAATAAATATACTTACTTTGGGAGTCCCCATAGTTTTGAGTCCAAGTCAATGGCTCCCGACGGGGTTCCTCCATATTTCCTAAGACACCAAGGCTGGACAGCTGATACCAAGACTCTTGAAAACTTCGACGCCACGCCAGCACTCGGCGTCGATGCTGCGTTACGAGCCCGCCTCCCTGAGCCGACCCAGTGGTGGTGGGAAAATGATGGAGAGGTTGGAGCCCAAATGAGGGACTCAACGTACTACGAAATGACCCTCCAACAGAGCTGGGAAAAGATATTTGAATGCTATAATAATAATGATAATGGTGATGTGGCAGTGGATGTTTGTGTTAGAAGGGAGGTGGTTTTAGTTGGAAGGGCGTTGTTGGCGGTAGAGACGGTGGTGGTTTCCGATGGGATTATGTGGTTCGATTCATCGTCGGTGGGGCTAAGCATGGCGATTGTGGAGAGGGTGAAATGGGAGGAGGAGAGATGTGGGTTTGTATGGGGGAGTGATCATGAGAAGGAGATAGAGAGAGTTGTGAGAAGAGAAAAGTTTGAAGGAAAGGGAGTGTGGAAGGGATTTAGGTGTTATGTTATGGTTGAAAGGTTTGTGCTTAAGAGAATGGATGGAACTTTGGTTCTTACTTGGGAATTTAGGCACATTCATCAAATTAGAACCAAATGGGAA 1245 44.74 MYLTRPLSLYRDSSSSSSSSASGEGPNTGVLVIEDEASESRWFFGLIKDTRVKVPPFPQNKLLELRYLKHNAADRRRHYYPTDYFHAMLIPVLNQPSNSNQYYVINSRGKTKGRRHYYPTDYFHAMLIPVLNQPSNSNQYYVINSRGKTKGLACTSSKEDDMTSCCCFNFIDDIPPQLFDPRNPYQQFQITNKYTYFGSPHSFESKSMAPDGVPPYFLRHQGWTADTKTLENFDATPALGVDAALRARLPEPTQWWWENDGEVGAQMRDSTYYEMTLQQSWEKIFECYNNNDNGDVAVDVCVRREVVLVGRALLAVETVVVSDGIMWFDSSSVGLSMAIVERVKWEEERCGFVWGSDHEKEIERVVRREKFEGKGVWKGFRCYVMVERFVLKRMDGTLVLTWEFRHIHQIRTKWE 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3180363 3182825 - Lsi04G003140.1 Lsi04g00314 660363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00314 415 MobiDBLite consensus disorder prediction 8 26 - -
Lsi04g00314 415 PANTHER OS08G0413200 PROTEIN 121 415 - -
Lsi04g00314 415 PANTHER OS08G0413200 PROTEIN 1 114 - -
Lsi04g00314 415 MobiDBLite consensus disorder prediction 1 28 - -
Lsi04g00314 415 Pfam Protein of unknown function (DUF1262) 24 114 IPR010683 -
Lsi04g00314 415 Pfam Protein of unknown function (DUF1262) 124 166 IPR010683 -
Lsi04g00314 415 PANTHER - 1 114 - -
Lsi04g00314 415 PANTHER - 121 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00314 - - - csv:105435580 525.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00314 Lsi-Chr4:3180363 Lsi11g00123 Lsi-Chr11:1399875 8.27E-60 dispersed
Lsi04g00313 Lsi-Chr4:3175907 Lsi04g00314 Lsi-Chr4:3180363 7.37E-88 tandem
Lsi04g00314 Lsi-Chr4:3180363 Lsi04g00315 Lsi-Chr4:3183982 2.97E-107 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g206 . . . . . . . . . . . Cma18g01064 . . Sed06g1838 . . Bhi07g01399 Tan04g0928 Cmetu10g1556 Lac13g0435 Hepe10g1847 . . . . . . . . . . . . . Lsi04g00314 Csa05g02556 Chy10g01096 Cme10g00316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001349 1 3 0 0 1 2 3 1 3 4 1 2 2 3 3 3 2 2 2 1 3 6 2 4 4 3 3 6 3 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00314 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 3.236881 0.0 0.0 0.0 0.0