Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00315 ATGTATGTAACAAGGCCACTTTCTCTGAACAGAAACTCGCCGTCGGCGTTATCTATAGCACCGCCGGAGGGTCCAAACTTGGGGATTTTGGTGATCAAAGACGAAGCTGCAGAATCCAAATGGCTATTCGGAATGCCTAAGGACGAAACAATTCTGGTCCCTCCTTTCCCTCAAAACAAGAAACTCTGGCTTTCCCATACAATGGTTGTCGGAACCAGTTCCTTCGTTGATTACATTTATGCCCTCTTTATTCCTGTTCTCAATCAGCCCTTGTCTTCTAACCAATATTACATTATCAAATCCAATGGAAGTGATAAAGGCACCAAGATTAGAGCATACGCAAGTTCAAGAGAAGAAAATCGTAGCCGATTGTTGGGCGTTGCTGATACACCACCACAAAAATTCGACCCAACAAACATTTACCAACAATTCGAAATCAGTAATGATATGTATTGTGGGAAACCCAACGGTTTCAATTTCAAGTCCGTGGCTTCCAATGGAACTACTCCATATTCCATGACACACAAAAACTGGCGAGCTTACTGCAAGACACTCAAGACCTTTCAACCCACCACCGAAGCACTTGGCCTTGACGCGCTGCTCCGTGCCCGCCTCCCTCCGCTCATCTTCTCCCTGCCCTGCAAATCGAAAATGGTACTGCCCTTTCATTTTCGTCCGAGAAGGGAGGTTGATTCTCAAATCAAGAACTCTCCCTATTACGAAATAACCCTTCAACAGAATTGGGAGGAGATTTTTGAGTGTGGGAATTCGGGAGGCAGAGGAGTGCAGTTGGATGTTTTGGTGGAGAAGGAAGTGGTTTCGGTTGCAGGGCGGGCGATGGCCGGAATAAATGTCGGCGATGGGGCAGCGTGGTTTGGTTCGTCGAGAGTTGGGTTGAGCTTGGCGATTGTGGAAAGGATAAAATGGGAAGAGGAGAGAGGTGGATTTGAATGGGTTAGAGATGGAGGAGAAAAGGAAGTGAAGGTGAAAAGAAGGGAAGAGTTTGAAGGGGTGGGAATGTGGAAGAGATTTGGATGTTATGTTTTGGTTGAGAGGTTTGTGCTTAAGAAAATGGATGGAACT 1083 46.17 MYVTRPLSLNRNSPSALSIAPPEGPNLGILVIKDEAAESKWLFGMPKDETILVPPFPQNKKLWLSHTMVVGTSSFVDYIYALFIPVLNQPLSSNQYYIIKSNGSDKGTKIRAYASSREENRSRLLGVADTPPQKFDPTNIYQQFEISNDMYCGKPNGFNFKSVASNGTTPYSMTHKNWRAYCKTLKTFQPTTEALGLDALLRARLPPLIFSLPCKSKMVLPFHFRPRREVDSQIKNSPYYEITLQQNWEEIFECGNSGGRGVQLDVLVEKEVVSVAGRAMAGINVGDGAAWFGSSRVGLSLAIVERIKWEEERGGFEWVRDGGEKEVKVKRREEFEGVGMWKRFGCYVLVERFVLKKMDGT 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3183982 3187745 - Lsi04G003150.1 Lsi04g00315 660364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00315 361 Pfam Protein of unknown function (DUF1262) 23 122 IPR010683 -
Lsi04g00315 361 PANTHER - 1 361 - -
Lsi04g00315 361 PANTHER OS08G0413200 PROTEIN 1 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00315 - - - csv:105435579 602.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00313 Lsi-Chr4:3175907 Lsi04g00315 Lsi-Chr4:3183982 1.35E-116 dispersed
Lsi04g00315 Lsi-Chr4:3183982 Lsi11g00123 Lsi-Chr11:1399875 2.09E-58 dispersed
Lsi04g00314 Lsi-Chr4:3180363 Lsi04g00315 Lsi-Chr4:3183982 2.97E-107 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g205 . . . . . . . . Cmo04g01629 Cmo18g01085 . . Car04g01608 Car18g00987 Sed06g1790 Cpe09g00234 Cpe01g01383 Bhi07g01400 Tan04g0929 Cmetu10g1131 Lac13g0434 . . . Cla05g02381 Cam05g2551 Cec05g2584 Cco05g2624 Clacu05g2553 Cmu05g2410 Cre05g2527 Cone13ag0877 Cone19ag0876 . . Lsi04g00315 Csa05g02555 Chy10g01094 Cme10g00317 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001349 1 3 0 0 1 2 3 1 3 4 1 2 2 3 3 3 2 2 2 1 3 6 2 4 4 3 3 6 3 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00315 Lsi_Chr04 FPKM 0.932624 0.886947 2.260705 2.225491 1.954318 2.049332 1.259287 7.256046 6.259091 7.987835