Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00318 ATGGTTTTCTTCTTCTTCTTCTTGTTATGGAATTCTTCTGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTTCAAGCCTTGATGGCCATTAAAGCTGCTTTGAAAGACCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAATTTGTCATTAGCTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCCTGTCACCGAGCATCGGAAATTTGACTAATCTTCAGTCAGTGCTTCTACAGGACAACAATATATCAGGAGCAATCCCAATGGAGCTTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGACTTCCATGGAGAAATTCCCACTTCTCTTTCCCGTCTCAAGAGTCTTCAATACCTGGACCTGTCTTTTAATAATCTTAGTGGCCCATTGCCCAGATTGCTAGCTAAAACCTACAACCTTGCTGGGAATTATCTCATTTGCTCACCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTCTTATTTCCAGTCAATACACCTCAAAAGCCACAACCTTCTGGGAGATCCAAGGGCCACAAGTTAGCGTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGTTAACTATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGACCAACGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATTTTCCAGTTCAGAGAGCTTCAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGATTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACAGTTATAGCTGTGAAGAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCTGTGCACCGGAACCTCCTCCGTCTCTATGGGTTCTGCATGACAGCCACAGAGAGATTGTTGGTTTACCCCTATATGTCTAACGGCAGTGTTGGATCCCGTCTCAAAGCTAAGCCAGCTCTGGATTGGAGCACGAGGAAAAGAATAGCATTGGGTGCAGCAAGAGGGTTATTGTATTTGCATGAGCAATGTGATCCTAAGATCATACACAGGGATGTCAAGGCAGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTTGGAGATTTTGGACTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTGCGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTATTTGGATATGGAATTCTTCTTCTTGAGTTGATCACAGGACAAAGAGCTCTTGAATTTGGAAAAGCTGCTAATCAGAAAGGAGCCATGCTTGATTGGGTCAAGAAAATTCACCAAGAAAAGAAGCTTGAAATACTAGTCGACAAGGATCTAAGGAACAATTACGACCGGATTGAGCTTGAAGAAATGGTTCAAGTAGCTCTCTTATGCACACAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAGTTCTCCTCATCGGAGCGATATTCTGATCTAACAGATGATTCTTCCTTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1773 43.49 MVFFFFFLLWNSSVNGLLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGAIPMELGNIPSLDTLDLSSNDFHGEIPTSLSRLKSLQYLDLSFNNLSGPLPRLLAKTYNLAGNYLICSPGSEHSCNGTAPPLLFPVNTPQKPQPSGRSKGHKLALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVGSRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3258592 3262288 + Lsi04G003180.1 Lsi04g00318 660367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00318 590 Pfam Protein kinase domain 271 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00318 590 SUPERFAMILY Protein kinase-like (PK-like) 248 540 IPR011009 -
Lsi04g00318 590 Gene3D Transferase(Phosphotransferase) domain 1 347 559 - -
Lsi04g00318 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
Lsi04g00318 590 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Lsi04g00318 590 SMART serkin_6 270 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00318 590 ProSiteProfiles Protein kinase domain profile. 270 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00318 590 Gene3D Ribonuclease Inhibitor 23 180 IPR032675 -
Lsi04g00318 590 Pfam Leucine rich repeat 89 149 IPR001611 GO:0005515
Lsi04g00318 590 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 3 144 - -
Lsi04g00318 590 SUPERFAMILY L domain-like 26 163 - -
Lsi04g00318 590 Gene3D Phosphorylase Kinase; domain 1 239 346 - -
Lsi04g00318 590 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Lsi04g00318 590 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 139 590 - -
Lsi04g00318 590 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 139 590 - -
Lsi04g00318 590 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 144 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g00318 Lsi09g00786 CCT
Lsi04g00318 Lsi09g00786 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00201 Lsi-Chr3:2629350 Lsi04g00318 Lsi-Chr4:3258592 0 dispersed
Lsi04g00318 Lsi-Chr4:3258592 Lsi09g00786 Lsi-Chr9:8919148 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83556 PF00069 Pkinase 5.30E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00318 - - csv:101208127 1108.2