Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00324 ATGCTTGGAAACAAAAAGACACCGATTAATTTAGTACATCTTCATTTGGGAACTACGACCTCCAATTCACTTCTTCTACTTACATCTGGATTCGATGTGACACTGAACTTTAAAGCCTTCTCCCACGCTCTTATCCACTCCATTCGCAAGCAAAAAAAAGGGAGAAAAAGAGGTGAAATGACTGGCATCCAGTTTTTTCCATCCGAAAACTCTTTTCAAATTCCTTCAAATATTGGCATGATGCAGAACAGCTTTCAGACTCTCCATAATTTCAATAGCTTTTTAGGCAACCTTCCGATGTCTCACGTCCCTCATCCCAGCCACGAATTCCTAGCACAATCCTCAAGTTTTAGCTACAACTCAACATCTGATGATGCAGAGGAACAACAGAAGAGTATTATTGATGAGAGAAAGCAGAGGAGAATGATTTCTAATAGAGAATCAGCTCGTAGATCGCGGATGAGAAAACAGAAGCACCTTGATGAGCTATGGTCTCAGGTACTTCGGCTTCGCACAGAGAACCATAAACTGATAGACAAGTTGAACCATGTATCTGATAGCCACGAAAAGGTTCTTTTGGAAAATGCCAGGCTCAAGGAAGAAGCCTCTGATCTTCGTCAGATGCTCAGTGACCTGCAAATTGGCAGCCCTTACACTCCTTGCTTGAGTAACCTCGAAGATATTCCCTGCAACACTGCACATCTCAGAGCTGAATCTTCATCATGCCAGTCCATCGCCAACTCCATAGATAACCTACTCCATTGA 765 42.61 MLGNKKTPINLVHLHLGTTTSNSLLLLTSGFDVTLNFKAFSHALIHSIRKQKKGRKRGEMTGIQFFPSENSFQIPSNIGMMQNSFQTLHNFNSFLGNLPMSHVPHPSHEFLAQSSSFSYNSTSDDAEEQQKSIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVLRLRTENHKLIDKLNHVSDSHEKVLLENARLKEEASDLRQMLSDLQIGSPYTPCLSNLEDIPCNTAHLRAESSSCQSIANSIDNLLH 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3309103 3313301 + Lsi04G003240.1 Lsi04g00324 660373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00324 254 SMART brlzneu 133 197 IPR004827 GO:0003700|GO:0006355
Lsi04g00324 254 CDD bZIP_plant_GBF1 138 188 IPR045314 GO:0003700|GO:0006355
Lsi04g00324 254 Gene3D - 135 191 - -
Lsi04g00324 254 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 140 155 IPR004827 GO:0003700|GO:0006355
Lsi04g00324 254 Coils Coil 188 215 - -
Lsi04g00324 254 Pfam bZIP transcription factor 137 195 IPR004827 GO:0003700|GO:0006355
Lsi04g00324 254 SUPERFAMILY Leucine zipper domain 137 187 IPR046347 GO:0003700|GO:0006355
Lsi04g00324 254 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 58 252 IPR044521 -
Lsi04g00324 254 PANTHER BZIP PROTEIN (ATBZIP48) 58 252 - -
Lsi04g00324 254 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 135 198 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00324 - - - csv:101209095 375.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00198 Lsi-Chr3:2596363 Lsi04g00324 Lsi-Chr4:3309103 1.23E-46 dispersed
Lsi04g00324 Lsi-Chr4:3309103 Lsi07g00979 Lsi-Chr7:12961573 2.59E-51 dispersed
Lsi04g01463 Lsi-Chr4:22372558 Lsi04g00324 Lsi-Chr4:3309103 1.47E-12 dispersed
Lsi04g01702 Lsi-Chr4:24401526 Lsi04g00324 Lsi-Chr4:3309103 1.74E-14 dispersed
Lsi11g00450 Lsi-Chr11:4699823 Lsi04g00324 Lsi-Chr4:3309103 2.56E-14 dispersed
Lsi01g00696 Lsi-Chr1:5555083 Lsi04g00324 Lsi-Chr4:3309103 3.22E-11 transposed
Lsi05g02094 Lsi-Chr5:27788450 Lsi04g00324 Lsi-Chr4:3309103 4.04E-08 transposed
Lsi08g00378 Lsi-Chr8:10431299 Lsi04g00324 Lsi-Chr4:3309103 5.93E-27 transposed
Lsi09g00783 Lsi-Chr9:8896910 Lsi04g00324 Lsi-Chr4:3309103 3.13E-51 transposed
Lsi02g00147 Lsi-Chr2:1205907 Lsi04g00324 Lsi-Chr4:3309103 1.06E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1021 . Blo16g01070 . . Bpe13g01357 Bpe10g00923 Bma14g01627 Bma15g00100 Cmo04g01636 Cmo18g01096 Cma04g00989 Cma18g01074 Car04g01617 Car18g00997 Sed06g1827 Cpe09g00249 Cpe01g01390 Bhi07g01419 Tan04g0937 Cmetu09g1500 Lac13g0423 Hepe10g1837 . . Cla05g02362 Cam05g2533 Cec05g2562 Cco05g2601 Clacu05g2528 Cmu05g2388 Cre05g2504 . . . . Lsi04g00324 Csa05g02545 Chy10g01085 Cme10g00324 Blo06g00950 Blo11g00811 Bda07g01496 . Bpe11g01623 . . Bma06g00750 . . Cmo15g00873 . . . Car15g00216 Cpe13g00999 . . . . . . . . . . . . . . . . . Chy09g00171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006441 4 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25123 PF00170 bZIP_1 3.30E-13 CL0018 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00324 Lsi_Chr04 FPKM 1.868141 1.823622 3.605145 3.802626 7.63203 6.657943 7.453884 2.722198 2.275866 3.062684