Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00325 ATGGCGTCTTCTCCGACTCCCATCTCTCCACTATCTTTTCCCAATCCAATACCAAGATCAAGATCAAGGTCAAAACCAAAACCAATGCCAAACAAACCGCCGTCTTCATTGCCTCCTGCGTTGAACCCCACCTCCAAATCTCCGCCCAAGGAACTTTACTTCAACCACGATGGCTCTACCTTTAAAAAACTTCAGGTCGGAGTTAATTTGGTGGCGGAGCTGGTGGGTGTTACGTTAGGGCCGAAGGGGAGGAATGTGGTACTTCAGAACAAATATGGACCGCCCAAGATCGTCAACGACGGTGAAACTGTCCTGAAAGAGATTGAGCTGGAAGACCCTTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTGATTGCTGAGGCTACTGTGGTCAGAGAAGATATTGGATTGACTTTAGAAAAGATCGGGAAAGAGGTATTGGGCTCTGCTAGTAAGGTTGTTATATCAAAAGATTCCACACTAATAGTTACAGATGGGAATACTCGGGAAGCTGTTCAGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAATTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGCCGAATTGCAATACTTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGATGCGTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACGAAGGTGGATGCTATAAAGAATGTCCTGGAAAATGACGAACAGATGATTGGAGCCGAAATTTTCAAAAGGGCTTTGGGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAGTGTTGTTATAGATAAGGTTCTAATTAACAATGATTTGGATTATGGATATAATGCCGCCACAGACCGTTACGAGGATCTAATGAAAGCTGGAATCATGGATCCATCAAAGGTTGTTAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTGGTTGATATGAAGAAACCAGAACCCATACCAAGAAGAACACCGATGCCAATCTCAGGTAAGCGGCATCAGACAAATGGGTCTCTAGCTCGACGGACAAGATCAGACTATGTCGGGAGTATTCTCAAGTTGAAGGAATTCTATGGGAGTATCGTTTTCAGACAGCCGTACGGTATTTCAGTCACCAGACAAATGGGTCTCGACTCTGGAGCCACCATTAAAATGGTATGTAGCCATGAACTAGCTGATACAAGGCATGTTGAGCAGCAAGTGAAAGACAAGGAGGCCGAGAATTTGTAG 1428 43.98 MASSPTPISPLSFPNPIPRSRSRSKPKPMPNKPPSSLPPALNPTSKSPPKELYFNHDGSTFKKLQVGVNLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEATVVREDIGLTLEKIGKEVLGSASKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEENFPKKILNERIARLSGRIAILQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVLENDEQMIGAEIFKRALGYPTKLIARNAGVNGSVVIDKVLINNDLDYGYNAATDRYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDMKKPEPIPRRTPMPISGKRHQTNGSLARRTRSDYVGSILKLKEFYGSIVFRQPYGISVTRQMGLDSGATIKMVCSHELADTRHVEQQVKDKEAENL 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3316174 3321444 + Lsi04G003250.1 Lsi04g00325 660374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00325 475 MobiDBLite consensus disorder prediction 21 45 - -
Lsi04g00325 475 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 25 151 - -
Lsi04g00325 475 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 25 151 - -
Lsi04g00325 475 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 150 385 - -
Lsi04g00325 475 PRINTS Tailless complex polypeptide 1 (chaperone) signature 73 89 IPR017998 GO:0140662
Lsi04g00325 475 PRINTS Tailless complex polypeptide 1 (chaperone) signature 129 148 IPR017998 GO:0140662
Lsi04g00325 475 PRINTS Tailless complex polypeptide 1 (chaperone) signature 95 113 IPR017998 GO:0140662
Lsi04g00325 475 Gene3D - 264 378 IPR027413 -
Lsi04g00325 475 Gene3D - 62 150 IPR027413 -
Lsi04g00325 475 MobiDBLite consensus disorder prediction 383 406 - -
Lsi04g00325 475 Gene3D - 227 263 IPR027410 -
Lsi04g00325 475 Coils Coil 192 212 - -
Lsi04g00325 475 Pfam TCP-1/cpn60 chaperonin family 161 380 IPR002423 GO:0005524
Lsi04g00325 475 Pfam TCP-1/cpn60 chaperonin family 71 165 IPR002423 GO:0005524
Lsi04g00325 475 SUPERFAMILY GroEL apical domain-like 148 229 IPR027409 -
Lsi04g00325 475 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 150 385 - -
Lsi04g00325 475 SUPERFAMILY GroEL equatorial domain-like 58 380 IPR027413 -
Lsi04g00325 475 ProSitePatterns Chaperonins cpn60 signature. 258 269 IPR018370 GO:0005524|GO:0006457
Lsi04g00325 475 Gene3D GroEL 151 226 IPR027409 -
Lsi04g00325 475 MobiDBLite consensus disorder prediction 1 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00325 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101209342 431.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00325 Lsi-Chr4:3316174 Lsi06g00390 Lsi-Chr6:4287428 5.47E-47 dispersed
Lsi04g00325 Lsi-Chr4:3316174 Lsi02g02935 Lsi-Chr2:35517864 6.28E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00325 Lsi_Chr04 FPKM 26.43285 28.957182 12.825372 13.251185 44.833397 40.240677 45.259167 4.292035 4.03647 3.618093