Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00326 ATGACAGCTGACAGTCTAAGCATACGTAAGCTTGCTGTTCTGCACCCAGTGAGACCTTTCATTAGAGGTTCTTTCCCGCGCTCAAAGCTCTTCTCTCCTTTTCCTTTCATTCCCAAAGGTTCCCGCCAACCAGGTTCCTTTTGCTTGCCTCAGAGTTCCTGCTTCAAGGGTGTGCGGTATGACAGTCCAGTAATGGGTGCAACGGAATTATCTGATCTTGAAGATGTGGATTTTTTGGTGGAGATGTGCATTACGCATACACTGCCACCGGCTCTGACGCTTAAGCAGGGGCTGGAGAGTATAAGTGAGGCCATTGAAAGGTTGAAATTAGAATCTCCACGTTCTTCCCATGGAGTTTTCAGGTTTCAGGTGGCTGTTCCCCCGAGTACAAGGGCTCTTTTGTGGTTCTGTTGTCAACCAGAGTCATCTGAAGTGTATCCTATCTTTTTCCTTTCCAATGAGAACGACGCCACGATTAAGTCACTATACTTGAATGATACCCGCGGTGTTTTTGGAATTGGAACTTCAATTTACTTTGCAAGCTTGTCTTCTACTTCATCAAAACGAAGTACATTAAAAAGGTATGTCATGAATGAATCAGCTCCTATTATGGCTTATGGTTTTGTTAATGCTAATACCGGGGAGACATCTTCACTGAAGAACGAGGCTCATCATTCATACTTTTACGTTCCCCAAATTGAGTTGAGGGAGTACGAGGGCATTTCTGTTCTCTCTGTAACACTTGCATGGAGTGAATCTTTCCCTTGTACATTTGAGGAAGCTCTCCATTCTTTGGGCTCAACTATCTACCAGATCAGTACTAATTTTCCATCTAGCGAAAACTCCCAGTACAAATATATAAGATCTTCATTAACAGCTTCAAAACTTGTGGACGGAACAAATCAGATGGCATACATGAAAGTGCTTTCTGTAGCTGGTGAAAGTTTCAGGACTGGCATCATGGAAATGGAGTCTGCACTCTCCCATCAATTCTGCATTAGGCTTTCACCAAGTGTTGCCATTGCATGTAATATGTTGGATCATATCAACAAAACTGGTCACTCAGAGCAAGAGCATGCCAACATTAATGCTCTCTGGGCATCGCTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGTATTTTTGCATAGCTCCTGGATCAAGATCATCCCCTCTTGCCATTGCTGCTGCAAGTCATCCCCTGATAACATGTGTTGCATGCTTTGATGAACGCTCTCTTGCTTTTCATGCAATTGGGTATGCCAAAGGATCTCATAGCTCAGCAGTCGTAATCACATCGTCAGGCACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCTAGTCAAGAATTTCTTCCTCTTTTATTGCTCACAGCTGACCGCCCCCCGGAGCTACAGGATGCAGGAGCAAATCAAGCTATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCCCCAACTGATCAAATTCCCGCCAGAATGGTACTTACTACTCTTGATTCTGCTGTACATTGGGCAACCTCTTCACCCTGTGGCCCCGTTCACATAAACTGTCCATTTAGAGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTGCTTAAATGGATTACACATTTGGTTATCAAGCACTGAAGTGTTTACCAAATATATTCGACTTGAAGCGTCTCCAATGTCTATTGATACTTTTGGCCATATGGCAGAGGTTTTGAAAGTAATCCATGGAGCCAGAACTGGAATTCTACTTCTTGGATCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTATTGGCCAAACATATTTCATGGCCAATAGTAGCTGATGTATTGTCTGGTTTACGATTGAGAAAGAGTTTGTCTTCCTTCCTAGAAATGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCACGTTTTGCTTTCTGATTCGGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGATTGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGATGCTTGAGGACTGCAGTCCCTGTTCATACATCATGGTTGATAAGCATCCAGGTCGTCATGATCCATCACATATTGTGACCCATAGAATTCAAAGCACCGTCTTAGAATTTGTTGGTTGTTTACTTAAAGCTGATTTCCCTCTCAATAGGAGCAAGTGGACTGCTACTTTAGGAGCATTGAATATGATGGTTGAGCGGGAAATACAATTTCAAATTTCTGCCAACTACTCTCTATCTGAGCCACAAGTTGCTCAGGTAATCTCAGAAGAACTTCCATTTGATTCTGTTCTGTTCCTGGGGAACAGCATGCCAATCCGTGATGTAGATATGTATGCATATGGTTGGTCAAAATGCAACGACAGTGTAGCGGCTAGATCATTAAACTTACAATTGCCATTTTGCTGGACATGGACTTCCGGAAATAGGGGAGCCAGTGGTATTGATGGACTTCTTAGCACAGCTGTTGGTTTTTCTGTTGGATGCAACAAACGAGTATTTCCAAATTTCCTTTTTCGTATATCATGGTTCATTTTTATAATATCCGACCTAGCAATGTTTCCAGAAAACTGGATAATAAGGTTGACGAGGAAACCTGTGACTGTAGTTGTAATCAATAATAATGGTGGGGCAATCTTCAGTCTCCTTCCCATCAAGGACAAAGTAGAGGCAGCAATACTAGACCAATTCTTCCACACCTCTCACAAGGTTTCACTCCGAAGCCTATGTGTGGCACATGGCCTGAAGCATTTACATGTGCGGACAAAGATGGAACTTCAAGATGCTTTATTTATGTCTCAACATGAAGAAAATGACTGCATAATCGAGGTTGAAAGTTCCATTCATGCCAATACTACCTTCCACAGTGTCTTGAGGAAGTTCACTTGCCAAGCAGTAGATCATGGTTTTCGCACCTTTTCAAGACTTTATTCTGAAGAATCTGTTTCACCTGGACTCTTCCTTTGCAAGATAAGTAGAATGGAATACACATTGTTCAGAATCCCACTATGTGCTCCACCTACAACTTCATCTAGTTCTATTGATCAAGTCAGTCGGAAGTTCTTCAGAGAAGGTTTTATTTTGTCTTTGTTTCTTGAGGACGGGAGTCTTGGGCTTGGTGAGGTTTCACCCCTTGATATCCACAGAGAGAACCTACTAGATGTGGAAGAGCAACTAAAGTGTCTCATTCATATATTAAAGGGATCCAAGATCAGCAGCTCCATTCCTCTGCTACGGGGCTCATTTTCGTCTTGGATTTTCCATGAACTGGGAATTCCACCAAGTTCAATCTATCCAAGTGTTAGATGTGGTTTGGAAATGGCTGTCCTCAATGCCATAGCAGGGAGAAAAGGTTGCAGCTTATTAGATGTACTCCAGCATCAGTTAGATGAAGAAAACAACTTCACTTCTTCGTCAAAAGTTCAAATTTGTGGGCTGTTAGATTCTGGTGGAACTCCATCTGAGGTTGCTCATGTTGCTATGACACTGGTAGCCCGACAAGGGAATGTCATGTATGATGCTGCAGTCGTACAGGAAGTAAGGAAGAAGCTTGGCAACCAAATTGAACTCCGTGTTGATGCCAATCGGAACTGGAGCTATGAAGAAGCTATTTTATTTAGCTCTTTGGTGAAGGACTGTGGCCTGCAATATATTGAGGAACCAGTTATGGATGAAGATGCTATTGTTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTGTCGATCGTATTCAAGATAATCCTGTGAAAGAACTTGCGAATTATGTTCATCCAGGAATTGTTGCTATAGTTATAAAACCAAGTGTCATTGGCGGATTTGAAAATGCAGCATTAGTAGCGAGGTGGGCACAGCAACATGGAAAAATGGCTGTTGTTAGTGCTGCTTTTGAAAGTGGTGTAGGTTTGTCTGGATATATACACTTATCCTGTTATCTGGAGCTTCAGAATGGAGAAGTAAGAAAACTGATGAATATTCAACCAGCCCCATCTATAGCCCACGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTAACTGTCAATCCTCTCAGAATTCACCGTGACCCTCATAGTGGCATTATTGAAGCATCTGCTGCTGAGGCTAATCGACTTCTAAAAAGTTTTCAAATCAACCAGAAGTTTGTTTGTAGAAAATTTACTGAAGAGCAAGTTCGTAGGTACAAATTAAGTGTAGACTCGAAGGGGTTCTCTTATTCAATAAAAGTTCTAGAGGTTGGGCAAAGAACAAACGTAAAGCTTGTGCAGGATAACGTGGTCCTCTTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGATTACAATCATGAAAGCCGTCTCAGGTTCAGCCAGATGTATTGCTCTCGACCTTCCTGGTCATGGGGAATCAACAACACGAAAGAATGATTGTGATGTTCATGGTGTGGAGGAACCAAGTTTTTCAATGGAAGTTGTTGCTGATCTACTGTATAAGTTGATTCATCATCTTGCTCCTGGTAAAGTTAACCTTGTAGGGTATTCAATGGGGGCTAGGATTGCCATGTACATGGCCCTGAGATTTGATGATAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCTGGATTAAAAGACAAGATGGCAAGAAGAATTCGTAGAGTTAAAGATGATTCTAGAGCACGAATCCTTAAGGTCTATGGCTTACAAAGCTTTCTTGAGGCGTGGTATTGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTATAGTAAAATTATTGCAAGCCGATTGGAGCATGATGATGTGCAGCTTCTTGCAAAAGCTCTCTCTGATTTAAGCATTGGAAGGCAGCCGCAATTGTGGGATGAATTAAAATGCTGCAAAACACCTCTTTCAATCCTTGTTGGGGAGAAGGATACAAAATTCAAGACAATTGCACAGCAAATTCTATCTCAAATTGATATGGGCAAGAAGATCAAAGATGAACCAGTTGTTGACCTCCATGAAATAGTTGAGATCCCGGACTCAGGACATGCTGCCCATCTGGAGAATCCTCTTGCTGTTATCAATGCATTAAGTAGATTTCTAATAAGGAGTAGAACACAGTGCTCTTACATTCGGATTTTGCAGGCCAAGTTGCAATTACGCATGAGAGCCACCTTTTGTAAGGGCACTGCTGTCTGTGTTCGGCATCAAATAAGAGAGTAA 5235 41.85 MTADSLSIRKLAVLHPVRPFIRGSFPRSKLFSPFPFIPKGSRQPGSFCLPQSSCFKGVRYDSPVMGATELSDLEDVDFLVEMCITHTLPPALTLKQGLESISEAIERLKLESPRSSHGVFRFQVAVPPSTRALLWFCCQPESSEVYPIFFLSNENDATIKSLYLNDTRGVFGIGTSIYFASLSSTSSKRSTLKRYVMNESAPIMAYGFVNANTGETSSLKNEAHHSYFYVPQIELREYEGISVLSVTLAWSESFPCTFEEALHSLGSTIYQISTNFPSSENSQYKYIRSSLTASKLVDGTNQMAYMKVLSVAGESFRTGIMEMESALSHQFCIRLSPSVAIACNMLDHINKTGHSEQEHANINALWASLIVEECSRLGLTYFCIAPGSRSSPLAIAAASHPLITCVACFDERSLAFHAIGYAKGSHSSAVVITSSGTAVSNLLPAVVEASQEFLPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFSLPAPTDQIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWLSSTEVFTKYIRLEASPMSIDTFGHMAEVLKVIHGARTGILLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEMENNFFFVDHLDHVLLSDSVRKWLKFDVIIQIGSRVTSKRVSKMLEDCSPCSYIMVDKHPGRHDPSHIVTHRIQSTVLEFVGCLLKADFPLNRSKWTATLGALNMMVEREIQFQISANYSLSEPQVAQVISEELPFDSVLFLGNSMPIRDVDMYAYGWSKCNDSVAARSLNLQLPFCWTWTSGNRGASGIDGLLSTAVGFSVGCNKRVFPNFLFRISWFIFIISDLAMFPENWIIRLTRKPVTVVVINNNGGAIFSLLPIKDKVEAAILDQFFHTSHKVSLRSLCVAHGLKHLHVRTKMELQDALFMSQHEENDCIIEVESSIHANTTFHSVLRKFTCQAVDHGFRTFSRLYSEESVSPGLFLCKISRMEYTLFRIPLCAPPTTSSSSIDQVSRKFFREGFILSLFLEDGSLGLGEVSPLDIHRENLLDVEEQLKCLIHILKGSKISSSIPLLRGSFSSWIFHELGIPPSSIYPSVRCGLEMAVLNAIAGRKGCSLLDVLQHQLDEENNFTSSSKVQICGLLDSGGTPSEVAHVAMTLVARQGNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIVKFCEESGLPVALDETVDRIQDNPVKELANYVHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLELQNGEVRKLMNIQPAPSIAHGLGTYRWLEEDVTVNPLRIHRDPHSGIIEASAAEANRLLKSFQINQKFVCRKFTEEQVRRYKLSVDSKGFSYSIKVLEVGQRTNVKLVQDNVVLFLHGFLGTGEDWITIMKAVSGSARCIALDLPGHGESTTRKNDCDVHGVEEPSFSMEVVADLLYKLIHHLAPGKVNLVGYSMGARIAMYMALRFDDKIGRAVIISGSPGLKDKMARRIRRVKDDSRARILKVYGLQSFLEAWYCGELWKSLREHPHYSKIIASRLEHDDVQLLAKALSDLSIGRQPQLWDELKCCKTPLSILVGEKDTKFKTIAQQILSQIDMGKKIKDEPVVDLHEIVEIPDSGHAAHLENPLAVINALSRFLIRSRTQCSYIRILQAKLQLRMRATFCKGTAVCVRHQIRE 1744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3321980 3339158 + Lsi04G003260.1 Lsi04g00326 660375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00326 1744 Pfam Enolase C-terminal domain-like 1180 1343 IPR029065 -
Lsi04g00326 1744 Gene3D - 574 750 - -
Lsi04g00326 1744 SUPERFAMILY Enolase C-terminal domain-like 1162 1369 IPR036849 -
Lsi04g00326 1744 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 368 536 IPR012001 GO:0030976
Lsi04g00326 1744 Gene3D alpha/beta hydrolase 1437 1705 IPR029058 -
Lsi04g00326 1744 Pfam alpha/beta hydrolase fold 1439 1548 IPR000073 -
Lsi04g00326 1744 Pfam Middle domain of thiamine pyrophosphate 548 778 IPR032264 -
Lsi04g00326 1744 Gene3D - 1001 1139 IPR029017 -
Lsi04g00326 1744 TIGRFAM menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 366 837 IPR004433 GO:0009234|GO:0030976|GO:0070204
Lsi04g00326 1744 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 360 973 IPR004433 GO:0009234|GO:0030976|GO:0070204
Lsi04g00326 1744 CDD TPP_SHCHC_synthase 757 958 - -
Lsi04g00326 1744 SMART MR_MLE_2 1164 1249 IPR013342 -
Lsi04g00326 1744 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 170 1707 IPR004433 GO:0009234|GO:0030976|GO:0070204
Lsi04g00326 1744 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 359 540 IPR029061 -
Lsi04g00326 1744 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 756 955 IPR029061 -
Lsi04g00326 1744 Gene3D - 358 554 - -
Lsi04g00326 1744 Gene3D - 1140 1373 IPR036849 -
Lsi04g00326 1744 SUPERFAMILY Enolase N-terminal domain-like 1001 1136 IPR029017 -
Lsi04g00326 1744 SUPERFAMILY DHS-like NAD/FAD-binding domain 522 736 IPR029035 -
Lsi04g00326 1744 Gene3D - 756 982 - -
Lsi04g00326 1744 SUPERFAMILY alpha/beta-Hydrolases 1439 1705 IPR029058 -
Lsi04g00326 1744 CDD TPP_PYR_MenD 368 529 - -
Lsi04g00326 1744 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1201 1232 IPR018110 GO:0009063
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00326 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - csv:101217012 3014.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00326 Lsi-Chr4:3321980 Lsi06g01484 Lsi-Chr6:25320379 2.14E-10 dispersed
Lsi04g00326 Lsi-Chr4:3321980 Lsi07g00252 Lsi-Chr7:2790282 3.82E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1016 . . . . . . . . Cmo04g01638 . . . Car04g01619 . . . Cpe01g01391 Bhi07g01424 . . . . . . Cla05g02365 Cam05g2535 Cec05g2564 Cco05g2603 Clacu05g2531 Cmu05g2391 Cre05g2507 . . . . Lsi04g00326 . Chy10g01084 Cme10g00326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00326 Lsi_Chr04 FPKM 6.178872 5.790191 11.985719 16.831114 35.822987 26.460167 30.536213 12.923415 14.087959 13.903829