Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00328 ATGGATATTGGTGACAGAGATAAATTTAGACTAGAAAGTAGCATAGAGGATTCTATTAACTGTTCGAATAGCATATCATCGGATTGGCGATTCGGCGAGACGACTCTCACAAGTATGCCAATCGGTTTGGTTTTGCCAGGGAATGTGGATGTAGTTAGGAATCAGGATATGGTTGGTTGTTCTTCTTCCACTGCTCCTGTGGTAGAGTCATTTAGCTCTACCTTATGGGAACAAGCAGCTCATTGTCAAAATTTGGGAATTAGCAACATTCAAGGCCATAACAACTCTAGTACTTCAAATACCATAGCAATTAGCAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCAGTGACATTGATAGAACACTTGACAGCTGGAACCTATCGCATAATATGTTAAAAGGGGGAGTTTACTTACCTAATATTCCCGGCGTGATCCCGCCGAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAGCGTGCAGCCAGGCTCTCCTGCTTTAGTGGTGGAAATTTTGGTGATGTTGTTGGCCATTTCAACATTCCTGAGCCTATGGGTGTTTTTTCCAGAGGCATGGGAGTAATCCCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGTTTGGTATCTGGAACTGGAGGACTATCTCAAAGAAACATGGTTAACTGTGAATCTTCCAAGCCTGTTTCTTTGACTGTTGAGCATGGAGCTACTGAAAGGGGTTCACCTAAAAATGGAAGCCCTTTGAAATTGGATGATCGTGGTAAACATGCCGTTGATGGTTCTGCTAATGACTCTGATGAAGCTGAGTTTAGCGGTGGTGATGGTTCGGGTGAGCCATGTACGGTAGAAGCCACAGGTAAGGAATTTTCTGTCAAGGGCCTTGGCTCAAGGAAAAGGAAAAGAAGTGGACAGAAGGCTGAACTTGATCGAGCCAATGGACCTCTGCAACAAACTGCTCTTTCACCTAAGGATCATGCTGAAACTCAGCAAAAAGGAGATCAAAATCCGTGTTCAACTGCAAACAAGAGTACAGGAAAACATGGTAAACAGGCATCTCAACCTTCTGATCCACCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGGGGCCAGGCAACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAATTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTCACTGGAAAGGCAGTGATGCTAGATGAAATCATCAACTATGTCCAATCACTGCAACGACAAGTCGAGTTTTTATCAATGAAACTCGCTACCGTGAATCCAAGGTTGGATATTAACATCGATGGGTTCATAGCCAAAGATATTCTTCAGTCACGAGTTGGTCCATCGTCGACATTGGGATTTTCTTCGCATATGCCCGTTGTTTGTCCCCCACCTCATATTTCTCATCATGGACATATCCCAAGCAATCTTCCTGCCATAGGGAGCTCTGAGATGTTAAGAAGCACAATAAATTCCCAGATGACTACAAGCTCTGGTGGATTTAAGGATCCTACTCAGGATCTGATTCACCAGGCAATACAAAAGTTGAACATTGAAATTTCTTCTTGA 1608 43.72 MDIGDRDKFRLESSIEDSINCSNSISSDWRFGETTLTSMPIGLVLPGNVDVVRNQDMVGCSSSTAPVVESFSSTLWEQAAHCQNLGISNIQGHNNSSTSNTIAISKASGCPVSLSSDIDRTLDSWNLSHNMLKGGVYLPNIPGVIPPSLSQLPADSSFIERAARLSCFSGGNFGDVVGHFNIPEPMGVFSRGMGVIPERWDEIPRNGLGLVSGTGGLSQRNMVNCESSKPVSLTVEHGATERGSPKNGSPLKLDDRGKHAVDGSANDSDEAEFSGGDGSGEPCTVEATGKEFSVKGLGSRKRKRSGQKAELDRANGPLQQTALSPKDHAETQQKGDQNPCSTANKSTGKHGKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGFIAKDILQSRVGPSSTLGFSSHMPVVCPPPHISHHGHIPSNLPAIGSSEMLRSTINSQMTTSSGGFKDPTQDLIHQAIQKLNIEISS 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3368247 3372484 + Lsi04G003280.1 Lsi04g00328 660377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00328 535 Gene3D - 371 444 IPR036638 GO:0046983
Lsi04g00328 535 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 17 524 IPR024097 GO:0006355
Lsi04g00328 535 MobiDBLite consensus disorder prediction 248 266 - -
Lsi04g00328 535 MobiDBLite consensus disorder prediction 295 310 - -
Lsi04g00328 535 SMART finulus 380 430 IPR011598 GO:0046983
Lsi04g00328 535 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 424 IPR011598 GO:0046983
Lsi04g00328 535 MobiDBLite consensus disorder prediction 317 354 - -
Lsi04g00328 535 MobiDBLite consensus disorder prediction 227 361 - -
Lsi04g00328 535 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 442 IPR036638 GO:0046983
Lsi04g00328 535 PANTHER TRANSCRIPTION FACTOR BHLH49 17 524 - -
Lsi04g00328 535 Pfam Helix-loop-helix DNA-binding domain 377 425 IPR011598 GO:0046983
Lsi04g00328 535 CDD bHLH_AtBPE_like 364 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00328 Lsi-Chr4:3368247 Lsi09g00778 Lsi-Chr9:8827021 5.01E-139 dispersed
Lsi04g00328 Lsi-Chr4:3368247 Lsi04g01455 Lsi-Chr4:22304152 3.02E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25124 PF00010 HLH 5.90E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00328 - - bhj:120081983 909.442