Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00332 ATGTCCAGAGCAATGGCGACAAAGCCAATACTGTCTTTGGCTGAACTTATCTTAGCTTCCATCTCAGAAATCATAGATTCTACAGAGTGCACTGAAGAAGAACATGGCAAATTTATTGAGATTGGAAGCTACTTTTATCGAGCAGCTCTGGCCATTGCGGAATTGCAGGCAATAGACCCAATGCCATTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATCATGCAAAGGAACTAGTGGAAAAGTTCCTAAATGGCATTCAACTAGTCTCAGATTCTGATCCAATTAGCATCATAAATCCACTAGAAGAGGTGATAAAACAAATGGGTGAATGCTTGAACAAGATAGCAACCGCTACATTTGAGGAACAGAATTACGTGAAAATGGCAATTCTATCACTTTCAGATGAGATGAAGAATATATCCACTAAAACTGTCCAAGCTCAAGCCATAATGAACATGCAAGAGATTCAAACTTCTTTGGAGGAACAATCAGAAAAAGAACCAGAAGTTATAGAGAAAGATCTATACCCCATTGATATGGACTGGGACACAAACAATACACAATCCCCAGTTGTATCGGAGTTGAGTGAAGCTGTTACAAATACAAACAGAAGAGGAAGCCAAATGAAGTATAGAAAGGTTACATCAGCCATGGCAGAACTACCCTCAATGACCTATTACTTAGAACCTTTCTTTGAGACCTTCATCTGTCCATTGACAAAGAATATCATGGACGATCCAGTTAGCTTAGAAACGGGAGTGTCATATGAAAGACAAGCAATTGTTGAGTGGCTTAAAGAGTTTGAAGAATCCGAGGAAATTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGTCCAAAGCTTTTAATTCCAACAGAGCTCTGAAGTCTACAATAGACAAATGGAAGGAACGCAATGAGATAGCAACAATCAAAGTCGCCCGGGCCGCTTTGTCTTTAGCCAGTTCAGATGCAATGGTGCTTGAGGCAATCAAAGACCTGTTGAGTATCAGCAAAGGGAAGCAGTTCAACATAGAACGGATCTTCAATTTTGACATGTTACCTTTGCTCGTTAACTTCTTGGAGTACAGAGACAGAGATGTTAGATATGCAGTTCTAGAGCTATTGCATCAAATGGCAGAAATCAATGAAGACAACAAGATAATGATCTGTAACCAATTGGACGTGTCAAGAATAATCAATCTATTATCAAGTAGTCACAGGTCCATTCGGGATAGAGCCCTGCTTCTGTTGTTTGAGCTTTCAAGATCCCAATTATTGTCAGATCCAATTGGTTCAGTAACTGGGGGGATTTCAATGCTGATCATCATGAAGGACAAAAGGTCCGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAACTTAGAGAAATCTCCAACGAATATCAAGCTTATGGCAGAAGGTGGACTCATGGAACCCCTCATAAGGCATCTTACTGAAGAATTTAATATTGCTAATTCAATCACCATAAGTCAATTAAGTAATTTAAATACAGGTAGTGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTCATTAGACATGATTGTATGGCGTATGTAGCTGAGAGGGCCTCTCCAGTTCTTGTCAAGATGGTGCACGAAGGAGATACATTTGTCCGCAAGGCAGCATTTAAAGCTCTATTGCAAATTTCATCTCACAGGCCTAATGGTAAAACACTTGCAAAAGCTGGAGCTGTACGAGTCATGGCTGAAGAGATGTTCACTCGTACCATCTGTGATGAACTTAATGATCCAAAAGCAGATGCAACTCAAATACTGGCAAATATATGCGAATCCAGTCTTGATCTTGAGACACTTCAAGTTAACGCTCATGGCTACACTATGAGTTCAGATTACGTAGTCTACAACATTATCGACTTGCTCAAGAACTCAACTCCAGATGAATCTAAATTTAGCATGAGTCTCATCAGAATACTATTATGCTCGACAAAATCTCCAAAACTAATGGACACCCTTGTTTCGGGTGTAAAAAACACTGAAGCATGTGATACCCTCATATATTTCATCAGTAGTCCAGATGAAGAACTTGGAGCTGCAGCAATAAAACTGCTCATATCACTGTCTCCTTGCATGGGCTTCACAATGGCAGAAAGACTCTGCAATACCAGTGACCAAGTGGAGAACCTTATCAGTAGCTTTACCTTGACAAAGCAAATCACAGAGAAGCAAGCACTTTCAGCAACATTCTTAGCAAAACTACCTCACCAGAGCCTAGCTCTAAACACCGTTATTGCAAACAAGAACATCGTGCCCAAGCTCCTGCAAATAATCAATCAAATACAAAGCAGAGAAACAGGAATGAGCAGGTATGCAAGTGCTTTACTAGAGGGTTCGGTGGGAATTCTTGTCAGATTCACAGCAACACTTTATGACCCGCAAATGTTGTTTCTGGCAAAAATTCACAATTTAACATCAGTGTTTGCTAACCTGCTCACCCAAGCATCAAGTGATGAAGTTCAAAAGCTATCCGCCATTGGGTTGGAGAAACTATCATCAGCATCCACGAGTCTATCCAAGCCCCTGAACATTAAAAGCAACAAGATCAAGAAATTTCTCCACTTACCCAAGCTTCTATCGCTAGGTCCATCAAAGAAGGGTTACTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCGAAGGCAATTGAAAAGCTATTGACGTGTTTAGACAATGAGAACGAAGAAGTAGTTGAGGCAGCTTTGTCCGCCATTTGTACGCTCGTGGATGACAAAGTGGATGTGGACAGAAGTGTGAGCCTGCTGAACGAATTTGACACAATAAGACATGTCCTGAATGTGGTGAGAATGCACAAGCAAGAATCTGTATGGCATAAATCATTCTGGTTGATCGAGAAGTTCTTGATCAAGGGTGGGGAAGAGTCACTTTCCAATATATCACAGGACAGATCATTGCCTGCAATATTGGCTACTGCTTCCCATCAAGGGGACAGCGAGACGAGGCGAATAGCAGAAAAAATATTGACCCATTTGAATATGGTACCAAATTTCTCTGCTCCTAGTTATACTCTATGA 3126 40.79 MSRAMATKPILSLAELILASISEIIDSTECTEEEHGKFIEIGSYFYRAALAIAELQAIDPMPFDEILQSLNKSINHAKELVEKFLNGIQLVSDSDPISIINPLEEVIKQMGECLNKIATATFEEQNYVKMAILSLSDEMKNISTKTVQAQAIMNMQEIQTSLEEQSEKEPEVIEKDLYPIDMDWDTNNTQSPVVSELSEAVTNTNRRGSQMKYRKVTSAMAELPSMTYYLEPFFETFICPLTKNIMDDPVSLETGVSYERQAIVEWLKEFEESEEIFCPVTGQKLVSKAFNSNRALKSTIDKWKERNEIATIKVARAALSLASSDAMVLEAIKDLLSISKGKQFNIERIFNFDMLPLLVNFLEYRDRDVRYAVLELLHQMAEINEDNKIMICNQLDVSRIINLLSSSHRSIRDRALLLLFELSRSQLLSDPIGSVTGGISMLIIMKDKRSDEFASEKADETLRNLEKSPTNIKLMAEGGLMEPLIRHLTEEFNIANSITISQLSNLNTGSEWMRIEMASYLGEIVIRHDCMAYVAERASPVLVKMVHEGDTFVRKAAFKALLQISSHRPNGKTLAKAGAVRVMAEEMFTRTICDELNDPKADATQILANICESSLDLETLQVNAHGYTMSSDYVVYNIIDLLKNSTPDESKFSMSLIRILLCSTKSPKLMDTLVSGVKNTEACDTLIYFISSPDEELGAAAIKLLISLSPCMGFTMAERLCNTSDQVENLISSFTLTKQITEKQALSATFLAKLPHQSLALNTVIANKNIVPKLLQIINQIQSRETGMSRYASALLEGSVGILVRFTATLYDPQMLFLAKIHNLTSVFANLLTQASSDEVQKLSAIGLEKLSSASTSLSKPLNIKSNKIKKFLHLPKLLSLGPSKKGYLRVCPVHKGACSSQNTFCLVHAKAIEKLLTCLDNENEEVVEAALSAICTLVDDKVDVDRSVSLLNEFDTIRHVLNVVRMHKQESVWHKSFWLIEKFLIKGGEESLSNISQDRSLPAILATASHQGDSETRRIAEKILTHLNMVPNFSAPSYTL 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3381127 3385792 - Lsi04G003320.1 Lsi04g00332 660381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00332 1041 CDD RING-Ubox_PUB 237 283 IPR045210 -
Lsi04g00332 1041 ProSiteProfiles U-box domain profile. 232 310 IPR003613 GO:0004842|GO:0016567
Lsi04g00332 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 316 IPR013083 -
Lsi04g00332 1041 ProSiteProfiles HEAT repeat profile. 354 390 IPR021133 -
Lsi04g00332 1041 SUPERFAMILY ARM repeat 319 663 IPR016024 -
Lsi04g00332 1041 SMART arm_5 384 424 IPR000225 GO:0005515
Lsi04g00332 1041 SMART arm_5 812 853 IPR000225 GO:0005515
Lsi04g00332 1041 SMART arm_5 342 382 IPR000225 GO:0005515
Lsi04g00332 1041 SMART arm_5 900 940 IPR000225 GO:0005515
Lsi04g00332 1041 SMART arm_5 468 508 IPR000225 GO:0005515
Lsi04g00332 1041 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 10 1040 - -
Lsi04g00332 1041 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 1040 - -
Lsi04g00332 1041 SMART Ubox_2 236 303 IPR003613 GO:0004842|GO:0016567
Lsi04g00332 1041 SUPERFAMILY ARM repeat 503 1028 IPR016024 -
Lsi04g00332 1041 Gene3D - 812 1035 IPR011989 -
Lsi04g00332 1041 Pfam Armadillo/beta-catenin-like repeat 900 938 IPR000225 GO:0005515
Lsi04g00332 1041 Pfam U-box domain 235 308 IPR003613 GO:0004842|GO:0016567
Lsi04g00332 1041 Gene3D - 504 709 IPR011989 -
Lsi04g00332 1041 Gene3D - 317 503 IPR011989 -
Lsi04g00332 1041 SUPERFAMILY RING/U-box 219 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00332 - - - csv:101217719 1588.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00332 Lsi-Chr4:3381127 Lsi08g00778 Lsi-Chr8:16156667 1.10E-120 dispersed
Lsi04g00332 Lsi-Chr4:3381127 Lsi10g01368 Lsi-Chr10:17834008 3.63E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00332 Lsi_Chr04 FPKM 9.054187 7.836822 1.253379 1.392539 19.447588 17.424568 18.913025 0.527647 0.29811 0.208172