Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00334 ATGTATAAGAAAGACAACCGAACAAACCCCAACAAACGGCGAAGGAAGAAAGATAAACGAAAATTGATAACTTGCCCAACAACAGGAATTGGGAATCCCTGGTACCAAAGAATGTGGAGAAACATTGTCAAAAGAGCTGCTTCAAGGCAAGCTACATTATTCTCCGAGTTGTCTTCTTCTAGCTCAAGAAAAGTTATCGAAGACCATATCATTCTCGATCAAATTAGATCTTCCAGGACGCTCGAAAGCTTGAACACTTGTTTCCAATCAGGAGGCGCTCGTAGAATCAGCTTTCTTCATCCCCACAAAGTTGGATTTACGAACTCCAATTTCCTACATTCAAGCAATCCCGTAGCTTTTTCTGGGGTTCTAAACCATGCCAAAGGCTACGCTACTGCTGCCGAGGCAGCCATATCTGAGGAGGATTTATCGGGCTCCGAAGAAATTCAGGAATTGATGGAGGAGCTAAGCAAACAAGATAAGGTGGAGCCTCACTTTAAGCAGCCTAAGAAAATGGTCGATGGAATGGGGGTAACTAAGTACAATATGCTACGGAAGAGACAGATAAAGATGGAGACAGAGGCATGGGAAGAGGCTGCCAGAGAATACCAAGAACTATTAACGGATATGTGTGAGCAGAAGCTGGCGCCCAATTTACCTTACATGAAGTCTTTATTCCTTGGTTGGTTCGAACCTTTGCGTGATGCAATTGCTGCGGACCAAGAATTTTGCAAGGACAAGAAGAGTATGATGGCAGTCATTACAATGCATAAGTTAATGGGGTTGCTGATGAGTAGCGCTGGAGGCAATGGTAGTGTCAGGGTAGTCCAAGCTGCTTCTCAGATAGGAGAAGCAATTGAACACGAGGTTAGAATACACAATTTCTTTGAGAAGACAAAGAAGAACAGTAAGGGAAAAAATATTGAAGAAGAAACTGAACCTGTGGCCGGAAAACAGGAGAAACTGGCCAAAGATCAAGACAGATTGAAAAAAAAAGTCGCTAAACTGATAAAACAACAGAAGTTGCAGCAAGTGAAGATGATAGTCAAGGAGCATGATGATTTAAAGCCTTGGGGCCAGGATGTTCATGTGAAGGTAGGTTGCCGTTTGATTCAGTTGTTGATGGAAACAGCTTATATTCAACCTCCAGTTGATCAGTTAGGAGATGGTCCACCTGATATTCGCCCCGCATTTGTCCATACTCTTAAAACCATCACAAAAGAAGCACAGAAGACTAGCAGGAGATATGGTGTTATTGAATGTGATCCACTTGTTCGTAGAGGCCTAGAGAAAACTGCTAGGCACATGGTCATTCCGTATATGCCTATGCTGGTGCCTCCTCTTAAATGGACAGGGTATGACAAAGGGGCATACTTATTCCTACCATCATATGTAATGCGAATACATGGGGCAAAACAGCAACGTGAAGCAGTTAAAAGGGCTCCAAAGAAGCAACTAGAGCCTGTTTTCGAGGCACTTGATACACTTGGAAGAACCAAATGGAGGGTGAACAAAAGAGTTCTTAGCATTATTGACATGATATGGGCTAGTGGTGGTCGTCTTGCTGGCTTGGTTGACCATGAAGATGTTCCTCTGCCAGAGGAGCCAAGCGTGGAAGATGAAGCAGAAATTCGAAAATGGAAGTGGAAAGTCAAGGCTGTGAAAAAGGAGAATAGTGAAAGGCATTCACAACGGTGTGACATAGAGCTTAAGCTTGTGGTGGCCAGAAAAATGAAAGAAGAGGACGGGTTTTACTATCCTCACAACCTTGATTTTCGAGGTCGTGCATACCCCATGCATCCATATTTGAATCATCTTGGTTCTGATTTGTGTCGAGGAATCCTAGAATTTGCAGAGGGACGACCTCTTGGAGAGTCAGGGTTACGTTGGTTAAAGATACATTTAGCAAATCTGTATGCTGGTGGTGTGGATAAATTATCTTATAAGGATCGAGTATCATTTACCGAGAACCATTTGGATGAGATTTTTGATTCTGCAGACAGGCCTCTCGAAGGAAACCGTTGGTGGTTGGGTGCAGAGGATCCTTTTCAGTGCTTGGCAGTGTGTATTAATCTGTCAGAGGCATTAAGAAGTCCCTCGCCCGAAACTACTATTTCCCATATGCCTGTACATCAGGATGGTTCCTGCAATGGCTTGCAACACTATGCAGCTCTTGGGAGGGATAAGTTGGGAGCAGCAGCAGTTAACCTTGTAGCAGGTGACAAGCCCGCAGATGTGTACTCAGGAATTGCTTCCAGGTTGCTGCATCTCTTGTCTGCTTGTTTGATTAAGTCGAGTCTTAATAACCCAGTGGGTGGCAATGCCACAGTTCTTGACATAATGCGAAGTGATGCAGAGAAAGATCCTGCAAGTAATCCAAATGCGTTGCATGCTAGACTCTTAATCAATCAGGTGGATCGTAAACTGGTGAAGCAGACAGTCATGACATCAGTGTATGGTGTTACTTATGTTGGTGCTCGAGATCAGATTAAAAGAAGGTTGAAAGAACGAGCATCCATTGCTGATGATACACAGTTATTTGCAGCTTCTTGCTATGCAGCTAAAACTACCTTGACTGCCTTGGGGGAAATGTTTGAAGCAGCAAGAAGTATCATGAGCTGGCTTGGTGAATGTGCAAAGTCTCACCAACTTGAACTTGGAATTATCCGTGAGTCTTCCTGCCTCTATTTCAATGCAAGATATCTTCCACCTTGTCCACATCCTTCAGTACAGTCAATAAATCTCCAAACTCCTCAGCCTCCTAATATCATAATTTTGAAATACAACTCCAAGGATTGCATATTTCAACTTTCTGACTTATCCGTAGATGCTCCAAATAACTTGATTTTATATCATCTTGGAGAGTTTATTGGTTTTAACGACATTGCCTTTCTTTTCTTAGTTAAGCTTAGAAATCAGATATTATGTGCATTTCAATTTCAACAGGTAATATCTTCAGAAAATCAGCCAGTTCGATGGACCACTCCTCTTGGACTACCAGTGGTGCAACCTTACCGGCAACTAGGAAGGCATCTTATCAAGACTTCCTTGCAAGTGTTGACTCTACAACGAGAAACTGACAAGGTAGCTAGTATTCTCTTTTTCTTTTGCTATGGGCAAGGAGCATATGCTTTGACTTATGAAGTCATGGCTAAGCGTCAGAGAACAGCATTTCCTCCAAATTTTGTACACTCCCTTGATGGTTCTCATATGATGATGACTGCTATCGCCTGCAAAAGGGCAGGCCTAAACTTTGCAGGTTCACTTCATTTTTCCTTTTTCTTTCCCAACTGGGTCCTTTATCTCAGCGAACTCAGAGTCCATGATTCATATTGGACCCATGCATGTGATGTTGACGAAATGAACAGAATACTTAGGGAGAAGTTTGTTGAGCTATATGAGGCCCCTATTCTGGAGAATTTATTGGAGAACTTCCAAAAGTCCTTCCCCACGTTAAAGTTTCCTCCCTTACCTGATCGGGGAGACTTCGATCTCAAAGATGTTCTGCAGTCTTCCTATTTCTTCAATTAG 3531 42.85 MYKKDNRTNPNKRRRKKDKRKLITCPTTGIGNPWYQRMWRNIVKRAASRQATLFSELSSSSSRKVIEDHIILDQIRSSRTLESLNTCFQSGGARRISFLHPHKVGFTNSNFLHSSNPVAFSGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELSKQDKVEPHFKQPKKMVDGMGVTKYNMLRKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAADQEFCKDKKSMMAVITMHKLMGLLMSSAGGNGSVRVVQAASQIGEAIEHEVRIHNFFEKTKKNSKGKNIEEETEPVAGKQEKLAKDQDRLKKKVAKLIKQQKLQQVKMIVKEHDDLKPWGQDVHVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMLVPPLKWTGYDKGAYLFLPSYVMRIHGAKQQREAVKRAPKKQLEPVFEALDTLGRTKWRVNKRVLSIIDMIWASGGRLAGLVDHEDVPLPEEPSVEDEAEIRKWKWKVKAVKKENSERHSQRCDIELKLVVARKMKEEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRVSFTENHLDEIFDSADRPLEGNRWWLGAEDPFQCLAVCINLSEALRSPSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIASRLLHLLSACLIKSSLNNPVGGNATVLDIMRSDAEKDPASNPNALHARLLINQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERASIADDTQLFAASCYAAKTTLTALGEMFEAARSIMSWLGECAKSHQLELGIIRESSCLYFNARYLPPCPHPSVQSINLQTPQPPNIIILKYNSKDCIFQLSDLSVDAPNNLILYHLGEFIGFNDIAFLFLVKLRNQILCAFQFQQVISSENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVASILFFFCYGQGAYALTYEVMAKRQRTAFPPNFVHSLDGSHMMMTAIACKRAGLNFAGSLHFSFFFPNWVLYLSELRVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLENFQKSFPTLKFPPLPDRGDFDLKDVLQSSYFFN 1176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3388300 3397988 - Lsi04G003340.1 Lsi04g00334 660383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00334 1176 PANTHER DNA-DIRECTED RNA POLYMERASE 981 1030 - -
Lsi04g00334 1176 PANTHER DNA-DIRECTED RNA POLYMERASE 774 883 - -
Lsi04g00334 1176 PANTHER DNA-DIRECTED RNA POLYMERASE 38 759 - -
Lsi04g00334 1176 Coils Coil 186 206 - -
Lsi04g00334 1176 Gene3D - 621 699 - -
Lsi04g00334 1176 Coils Coil 319 339 - -
Lsi04g00334 1176 PANTHER DNA-DIRECTED RNA POLYMERASE 1046 1176 - -
Lsi04g00334 1176 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 709 720 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lsi04g00334 1176 Pfam DNA-directed RNA polymerase N-terminal 187 498 IPR029262 -
Lsi04g00334 1176 Gene3D - 165 497 IPR037159 -
Lsi04g00334 1176 Gene3D - 730 1064 - -
Lsi04g00334 1176 SMART RPOL_N_2 186 498 IPR029262 -
Lsi04g00334 1176 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 38 759 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lsi04g00334 1176 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 1046 1176 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lsi04g00334 1176 MobiDBLite consensus disorder prediction 303 324 - -
Lsi04g00334 1176 SUPERFAMILY DNA/RNA polymerases 172 1176 IPR043502 -
Lsi04g00334 1176 Gene3D - 499 581 IPR024075 GO:0003899
Lsi04g00334 1176 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 805 819 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lsi04g00334 1176 Pfam DNA-dependent RNA polymerase 621 1093 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lsi04g00334 1176 Pfam DNA-dependent RNA polymerase 1106 1176 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lsi04g00334 1176 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 981 1030 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lsi04g00334 1176 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 774 883 IPR002092 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00334 K10908 POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] - csv:101217958 1300.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00334 Lsi-Chr4:3388300 Lsi11g00696 Lsi-Chr11:7348956 5.56E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1006 . . . . . . . . . Cmo18g01103 . Cma18g01081 . . Sed06g1812 Cpe09g00242 . Bhi07g01439 Tan04g0951 Cmetu04g2545 Lac13g0412 Hepe10g1827 . . Cla05g02372 Cam05g2540 Cec05g2571 Cco05g2609 Clacu05g2538 Cmu05g2397 Cre05g2514 . . . . Lsi04g00334 Csa05g02536 Chy10g01079 Cme10g00332 . . . . . . . . . . . . . . Car15g00220 Cpe13g00995 . . . . . . . . . . . . . . . . . Chy09g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000643 2 4 3 3 2 3 3 3 3 3 3 3 4 3 4 5 3 4 5 3 3 3 3 5 4 3 3 3 4 3 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00334 Lsi_Chr04 FPKM 47.184776 49.294739 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0