Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00341 ATGCTTAGCCGTATTCATCAATGGAAGCCATTACATTTTCTGAGGAAATGTGGGATACTTGCTAGGCCTTCAGTTTCTGCCGCTCGACTCAAAGCGGAATCCGTCACTACCTCCCTTGTTCTGGACCGGGATGACCCAGTTTGTGAAATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCATATGTTGGTGGATGTAACTTTCAAACTGTTGTTTCTACTTTGAGTGAAACTGTAGTGGACGATGTTCTTGATAACTTGAGAACTCAAAATCCTGATGTTGCTGTGGCTTTTTTCTATTTGTTAAGAAACAAGTATGGATTTCGGCATTCCGGATTCTCCCAGTTTGCTGTTTCTCATATTTTAGCGGGTAAAGAACGATTCAAGGAGTTGCATTCCGTGATAAAGCAATTGCTTGAGGAGCAAGGGTCAGGCTCTGCATCTACCTTTTGTGACCTGCTATTGAACAAATTCAGGAATTGGGATTCAAATGGTGTGGTATGGGATATGCTGGCATTTGTGTACGCTAGACATGAAATGATCCAGGATGCCCTCTACGTCATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTGTTGCATAACATGAGGCACACTAATATTATATGGGATATATACAATGAGATCAAAGTTAGTGGAGCTCCTCATAGTGAATATACTACCTCAATACTTATACACGGCCTATGTGAGCAATCCAAGTTACAAGATGCGATTTCATTCTTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCATAATGTCAAGGTTTTGCAAAGTGGGACTAATAGATGTTGCAAGGTCATTTTTTTGTTTGATGGTCAAGAATGGACTTCTTCCTGATTCCTACAGTTATAATATTCTTGTTCATGGGTTATGTGTAGCAGGTTCCATGGACGAAGCTCTGGAATTCGCAGATGACATGAAAAAGCATGGTGTGGAACCTGATGTAGTAACACACAACACACTCGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCAGAAAGTTGTCCAGAAAATGTTGCTGAAAGGTCTAAATCCAGATCTTGTGACATATACAATACTGATATGTGGACATTGTCAGATGGGAAATATTGAGGAAGCTCTTAAACTGCGGCAAGAAACTCTTTCAAGGGGGTTTAAGTTGAATATCATTTCCTATAGTGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGTATAGAAGAGGCATTGACATTGCTTGATGAAATGGAAACTCTACGTTTAAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTACAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCAAACTACTTTGCTCAACGTGCTGTACTGTTAGGTCTACTTGAGAATGGAAATATATCTGAGGCAAGAAAATATTTTGATGCTATGACTTATATGGATCTGATAGAGGATGTTGTTTTGTATAATATTATGATTGATGGTTACGTAAGACTTGGTGATATTGCTGAGGCCATGCAGCTATATTACATAATGATTGAAAGGGGGATCACTCCAAGTGTTGTCACTTTCAACACTCTTGTCAATGGATTTTGCAGAAAGGGAGACCTAGTGGAGGCTCGAAAGATGTTGGAAGTCATTAGGTTGAATGGATTGCTACCTAGTGTGGTAACTTATACTACCCTTATGAATGCGTACTGTGAAGTAGGAAACATGCAGGAAATGTTTGATCTTCTTCATGAGATGGAAGCAAACTCTGTTACTCCAACTCATGTAACTTTTACTGTACTAATCAAAGGACTTTGCAGACAGAATAAGATGCATGAATCCCTCCAGTTGCTAGAGTATATGTATGCAAAGGGTCTAATGCCAGATCCGATCACATATAATACTATTATCCAAAGTTTTTGTAAGGGAAGAGACATTGCCAAAGCTTTCCAGCTTTATAATAAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAACGTACTTATTAATGGTCTTTGTATATATGGTGACCTAAAGGATGCTGATCAAATGCTAGTTTCTATGGAGGATCAAAATATTAGCTTGACAAAAGTTGCTTATATGACAATAATTAAAGCACATTGTGCAAAGGGTCAGGTCTCTAAAGCATTACGGTTCTTCAATCAAATGTTGGCTAAGAATTTTGTCATCTCCATTAGAGATTATAGCGCTATCATTAATCGGCTGTGCAAAAGGGGTCTAATTACTGAAGCGAAGTACTTCTTTGTTATGATGTTATCAGAAGGCGTAACTCCTGATTCTGAAATTTGTGAGACAATGCTTAATGCTTTCCATCAACAGGGCGATAACAATTCAGTGTTTGAATTCCTCGCTATGGTGGGTGTAGAGGATAAATTTCTCTCTGTGGAATATATCAAACTTTATGCCGCAGATAATCAACGAAAGGAAAATCATGTCAATGACCCTCATGGGGCTCTCCCTGCTTGGAGGCTGCAGCAGAGTTGTGCTAACAACTATAAGCTGAGATTGATTCCTTGCAACTAG 2616 38.99 MLSRIHQWKPLHFLRKCGILARPSVSAARLKAESVTTSLVLDRDDPVCEILTGLNSFGFRAYVGGCNFQTVVSTLSETVVDDVLDNLRTQNPDVAVAFFYLLRNKYGFRHSGFSQFAVSHILAGKERFKELHSVIKQLLEEQGSGSASTFCDLLLNKFRNWDSNGVVWDMLAFVYARHEMIQDALYVIAKMKDLNLQASVPTYNSLLHNMRHTNIIWDIYNEIKVSGAPHSEYTTSILIHGLCEQSKLQDAISFLQDSNEVVGPSIVSINTIMSRFCKVGLIDVARSFFCLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFADDMKKHGVEPDVVTHNTLAKGFLLLGLMSGAQKVVQKMLLKGLNPDLVTYTILICGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGRIEEALTLLDEMETLRLKPDFIVYSILIHGLCKEGFVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLLENGNISEARKYFDAMTYMDLIEDVVLYNIMIDGYVRLGDIAEAMQLYYIMIERGITPSVVTFNTLVNGFCRKGDLVEARKMLEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVTPTHVTFTVLIKGLCRQNKMHESLQLLEYMYAKGLMPDPITYNTIIQSFCKGRDIAKAFQLYNKMLLHNLDPTHVTYNVLINGLCIYGDLKDADQMLVSMEDQNISLTKVAYMTIIKAHCAKGQVSKALRFFNQMLAKNFVISIRDYSAIINRLCKRGLITEAKYFFVMMLSEGVTPDSEICETMLNAFHQQGDNNSVFEFLAMVGVEDKFLSVEYIKLYAADNQRKENHVNDPHGALPAWRLQQSCANNYKLRLIPCN 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3414952 3420430 - Lsi04G003410.1 Lsi04g00341 660390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 687 719 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 759 791 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 617 650 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 407 440 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 722 755 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 582 615 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 442 475 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 547 580 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 512 545 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 652 685 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Lsi04g00341 871 TIGRFAM PPR: pentatricopeptide repeat domain 267 301 IPR002885 -
Lsi04g00341 871 Gene3D Tetratricopeptide repeat domain 212 328 IPR011990 GO:0005515
Lsi04g00341 871 Pfam PPR repeat 722 752 IPR002885 -
Lsi04g00341 871 Pfam PPR repeat 759 787 IPR002885 -
Lsi04g00341 871 Gene3D Tetratricopeptide repeat domain 569 642 IPR011990 GO:0005515
Lsi04g00341 871 Gene3D Tetratricopeptide repeat domain 398 469 IPR011990 GO:0005515
Lsi04g00341 871 Gene3D Tetratricopeptide repeat domain 643 716 IPR011990 GO:0005515
Lsi04g00341 871 Gene3D Tetratricopeptide repeat domain 66 211 IPR011990 GO:0005515
Lsi04g00341 871 Gene3D Tetratricopeptide repeat domain 329 397 IPR011990 GO:0005515
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 755 789 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 685 719 IPR002885 -
Lsi04g00341 871 Pfam PPR repeat 365 395 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Lsi04g00341 871 Pfam PPR repeat family 649 697 IPR002885 -
Lsi04g00341 871 Pfam PPR repeat family 579 628 IPR002885 -
Lsi04g00341 871 Pfam PPR repeat family 405 453 IPR002885 -
Lsi04g00341 871 Pfam PPR repeat family 264 312 IPR002885 -
Lsi04g00341 871 Pfam PPR repeat family 510 558 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 615 649 IPR002885 -
Lsi04g00341 871 SUPERFAMILY TPR-like 315 539 IPR011990 GO:0005515
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 720 754 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 650 684 IPR002885 -
Lsi04g00341 871 SUPERFAMILY HCP-like 486 752 - -
Lsi04g00341 871 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 19 817 - -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Lsi04g00341 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Lsi04g00341 871 Gene3D Tetratricopeptide repeat domain 718 822 IPR011990 GO:0005515
Lsi04g00341 871 Gene3D Tetratricopeptide repeat domain 472 564 IPR011990 GO:0005515
Lsi04g00341 871 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 19 817 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01313 Lsi-Chr3:23942234 Lsi04g00341 Lsi-Chr4:3414952 1.54E-06 dispersed
Lsi04g00341 Lsi-Chr4:3414952 Lsi02g00068 Lsi-Chr2:584860 2.85E-58 dispersed
Lsi04g00341 Lsi-Chr4:3414952 Lsi04g00798 Lsi-Chr4:7544236 5.44E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00341 - - bhj:120081514 1488.4