Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00348 ATGAAAGTTGAGGGTGAGCCCATAGTTTGCCATTCAAATGCATCCCCCAAGTTTGTTCCCAAGTCTTTTGAATGCGATAATGATGCTCTCGATTCTGGTGGGATGAAGCTTGAAGATCAGAAAGAATTTACAAGCCTTCTCAAAGGTAATGAGGATGCCAATCACAATAATATTGCTGCAGATGGCTGGGTTGCAATGAAGCATGAATGTTTAGATCTCGATGATTTTAATGACTATGACGATGTTAAAGCCTTCGTGTCACCACTCACTAATTCTTCTAAAGTAGACTTGTTTGAGGAAGACTCGGAATTATACATGGAAAAGAGTATTGTTGAATGTCAACTTCCCGAACTAATAGTTTGTTACAAAGAAAATATTTGCAATATTGTGAAGGATATTTGTATTGACGACGGAGTACCTTCTCGGGATAAGCTCTTTTGTGGTAGTAGTTTGGATGAGAAGGATGCCTGTTCGATTCTCCCTTCTAAGGAAGATTGGAAGGAAAAGTTGGTAGGAGAACTAGAGAAAAGAGATATGTTTGCTTCAGATGATTCAGAGCATTCAGAATCTTTTGGCAATAAGGATTCACCCAAACAAAGTGATTCCAACGATTTGGCTAGAACACCTGAGGCAGAATATGATGTGGCATATTTTACTGACAATGATATGCTAAGTCTTCCAATGACTGACTTGGTTACAGAGAGCTTAAAGCCACTGACCAACAATAAGAATGAGCCTCAAGCTCAGTCTGAACAGGTTTTTATTGAAAGTACGAGTTTGGAAGTCCCTGTTTTGGCATGTGTAGCTGAAGAATCTTTTAGTAACACCAGAGAAGCAATATCAGAGTCCACTACTTCAGCTCTAGCACCTGAAGAGACCAAAAATAGTGATTCAGCGAATGATATATCATACAATAGTAAAGTGGACAAAGGAAACATTACTTTTGATTTCAATTCTTTAGTATCAACAGCTAGTGATGGACTGGAGCGTTGTGATAATGGTGACTTGAACTCTTCAGCTCCTTCAACCAGTGCCTCGGTGGGCTGCGAAGAGACTAGCAGCTCCAACCCTTTAGCTTCTGATGACAAGTGTCAAGCACAGTGTCACGATACTAGTAGTAACCCTAAACGTGTGGAATATGAAGACTTACTACGAGTGGAATATGGAGACTTACCTAAGACGGAGGTTGGAAATTTTGATAGTCATACAGTTTCAAGCCAAGTCCAACACGGCATAGGTGAAACAAGTTTCTCTTCTGTGGTACTCGGTGAAACAAGTTTCTCTTCTATGGTACCTTTGGGGAGTCTGATTTCTAATTCAGGCCGTATAGGTTACTCTGGTAGCATCTCTCTTCGGTCTGATAGCAGCACAACCAGCACCCATTACAATCTGAGTGGAATAGCAGCCCTGTTAGAATGGCTAAAGCTGATCGAAAGCATCTACGGAAGCATCGGGGTTGGAGACATGGCATTCTGTGCTGTAGATTCTGAAAGCTTCTACTAA 1503 40.98 MKVEGEPIVCHSNASPKFVPKSFECDNDALDSGGMKLEDQKEFTSLLKGNEDANHNNIAADGWVAMKHECLDLDDFNDYDDVKAFVSPLTNSSKVDLFEEDSELYMEKSIVECQLPELIVCYKENICNIVKDICIDDGVPSRDKLFCGSSLDEKDACSILPSKEDWKEKLVGELEKRDMFASDDSEHSESFGNKDSPKQSDSNDLARTPEAEYDVAYFTDNDMLSLPMTDLVTESLKPLTNNKNEPQAQSEQVFIESTSLEVPVLACVAEESFSNTREAISESTTSALAPEETKNSDSANDISYNSKVDKGNITFDFNSLVSTASDGLERCDNGDLNSSAPSTSASVGCEETSSSNPLASDDKCQAQCHDTSSNPKRVEYEDLLRVEYGDLPKTEVGNFDSHTVSSQVQHGIGETSFSSVVLGETSFSSMVPLGSLISNSGRIGYSGSISLRSDSSTTSTHYNLSGIAALLEWLKLIESIYGSIGVGDMAFCAVDSESFY 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3456603 3461910 - Lsi04G003480.1 Lsi04g00348 660397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00348 500 MobiDBLite consensus disorder prediction 178 206 - -
Lsi04g00348 500 MobiDBLite consensus disorder prediction 275 302 - -
Lsi04g00348 500 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 38 460 - -
Lsi04g00348 500 MobiDBLite consensus disorder prediction 335 372 - -
Lsi04g00348 500 MobiDBLite consensus disorder prediction 178 194 - -
Lsi04g00348 500 MobiDBLite consensus disorder prediction 332 372 - -
Lsi04g00348 500 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 38 460 IPR040378 GO:0009786
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00348 - - - bhj:120081347 791.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00348 Lsi-Chr4:3456603 Lsi08g00915 Lsi-Chr8:17542535 4.09E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g993 . . . . . Bpe10g00909 . . . Cmo18g01111 . Cma18g01086 . Car18g01007 . Cpe09g00236 . . . . . . . . Cla05g02379 Cam05g2550 Cec05g2582 Cco05g2622 Clacu05g2550 Cmu05g2409 Cre05g2526 . . . . Lsi04g00348 . . . . Blo11g00799 Bda07g01494 . Bpe11g01661 . . . . . . . . . . . Cpe07g00098 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000606 4 19 2 1 2 2 5 2 2 2 2 2 4 2 2 4 2 2 5 2 2 2 2 2 2 2 2 16 5 1 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00348 Lsi_Chr04 FPKM 2.230811 3.21555 1.063369 0.942041 8.324512 6.511726 7.687572 0.709594 0.792306 0.658028