Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00353 ATGAAATATGATGGGCCTACACTGTTTCATGACGAGCACCAAACCCCATCTCCAGAAATGGGGAAAACCGGGGCCAAGTTGCCAAGTTTCTGCCTGAACCGGATCCGGCCTCATGTTCGAGTCCCTATTCAGTCCAAACCGGACTCTGTTTCTGTGAAAACCGGTCCAAACAAGAAGGCTGATGATTCTGTTGATGACATTCAAGTTGGAGCTAAGCCTGTGTTGGGAATTGGAAGGAAGATCATGATTGTAGTTGATTCCACCATTGAAGCTGAAGGAGCTCTTCATTGGGCTCTCTCTCACACTGTCCAAAATCAAGACAACATTCTTCTTCTCCATCTCACTAAACCTTCTACAAAAGGTCCTAATTTTCCACCCACATTCTCTCTTTTTTCTTATCTCCTTGGGTTTACAGGGGAAGGAGTAAGTAAAGAGACAGCACCAAGAGCTTATGAATTGGTTCATTCCATGAGAACTTTATGTCAATTGAAAAGACCAGAGGTGGAAACGGAAGTTGCGGTGGTGGAAGGAGGGAAGGAGAAAGGGGCAGTGATAGTAGAAGAAGCGAGAAAGCGAGGAGCGTCGTTGCTGGTTTTGGGGCAGAAGAAACGGTCGACGACATGGCGGCTTCTGATGGTGTGGGCAGGCCACCGATGGGGTAGCGGAGGCGGCGGCGGCGTGGTGGAGTATTGCATACAAAATGCGAGTTGTATGGCGATTGCAGTGAGAAGGAAGAGCAAGAAATTGGGTGGTTATTTGATCACTACAAAACGTCAAAAGGATTTCTGGCTTTTGGCTTAA 801 47.32 MKYDGPTLFHDEHQTPSPEMGKTGAKLPSFCLNRIRPHVRVPIQSKPDSVSVKTGPNKKADDSVDDIQVGAKPVLGIGRKIMIVVDSTIEAEGALHWALSHTVQNQDNILLLHLTKPSTKGPNFPPTFSLFSYLLGFTGEGVSKETAPRAYELVHSMRTLCQLKRPEVETEVAVVEGGKEKGAVIVEEARKRGASLLVLGQKKRSTTWRLLMVWAGHRWGSGGGGGVVEYCIQNASCMAIAVRRKSKKLGGYLITTKRQKDFWLLA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3515932 3517212 - Lsi04G003530.1 Lsi04g00353 660402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00353 266 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 79 246 - -
Lsi04g00353 266 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 11 266 - -
Lsi04g00353 266 MobiDBLite consensus disorder prediction 45 64 - -
Lsi04g00353 266 Pfam Universal stress protein family 79 243 IPR006016 -
Lsi04g00353 266 MobiDBLite consensus disorder prediction 1 23 - -
Lsi04g00353 266 CDD USP_Like 80 242 - -
Lsi04g00353 266 Gene3D HUPs 78 250 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00353 - - - cmos:111458216 360.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00353 Lsi-Chr4:3515932 Lsi05g01778 Lsi-Chr5:25097068 2.64E-21 dispersed
Lsi02g00139 Lsi-Chr2:1157903 Lsi04g00353 Lsi-Chr4:3515932 7.68E-45 wgd
Lsi04g00353 Lsi-Chr4:3515932 Lsi06g01395 Lsi-Chr6:24522479 1.54E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g6 . . . . . . Bma14g01716 . Cmo04g01798 Cmo18g01118 . Cma18g01096 . Car18g01011 Sed07g2036 Cpe09g00230 . Bhi07g01468 Tan04g0973 Cmetu10g0107 Lac13g0388 Hepe10g1807 . . Cla05g02384 Cam05g2556 Cec05g2588 Cco05g2629 Clacu05g2557 Cmu05g2414 Cre05g2531 Cone13ag0894 . . Cone9ag0527 Lsi04g00353 Csa05g02523 Chy10g01067 Cme10g00347 . . . . . . . Bma06g00744 . . . Cma04g01711 . Car04g01745 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009362 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00353 Lsi_Chr04 FPKM 3.275825 2.29324 2.929615 2.906063 1.568615 2.027077 2.060587 3.954449 4.691949 4.093004