Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00353 ATGAAATATGATGGGCCTACACTGTTTCATGACGAGCACCAAACCCCATCTCCAGAAATGGGGAAAACCGGGGCCAAGTTGCCAAGTTTCTGCCTGAACCGGATCCGGCCTCATGTTCGAGTCCCTATTCAGTCCAAACCGGACTCTGTTTCTGTGAAAACCGGTCCAAACAAGAAGGCTGATGATTCTGTTGATGACATTCAAGTTGGAGCTAAGCCTGTGTTGGGAATTGGAAGGAAGATCATGATTGTAGTTGATTCCACCATTGAAGCTGAAGGAGCTCTTCATTGGGCTCTCTCTCACACTGTCCAAAATCAAGACAACATTCTTCTTCTCCATCTCACTAAACCTTCTACAAAAGGTCCTAATTTTCCACCCACATTCTCTCTTTTTTCTTATCTCCTTGGGTTTACAGGGGAAGGAGTAAGTAAAGAGACAGCACCAAGAGCTTATGAATTGGTTCATTCCATGAGAACTTTATGTCAATTGAAAAGACCAGAGGTGGAAACGGAAGTTGCGGTGGTGGAAGGAGGGAAGGAGAAAGGGGCAGTGATAGTAGAAGAAGCGAGAAAGCGAGGAGCGTCGTTGCTGGTTTTGGGGCAGAAGAAACGGTCGACGACATGGCGGCTTCTGATGGTGTGGGCAGGCCACCGATGGGGTAGCGGAGGCGGCGGCGGCGTGGTGGAGTATTGCATACAAAATGCGAGTTGTATGGCGATTGCAGTGAGAAGGAAGAGCAAGAAATTGGGTGGTTATTTGATCACTACAAAACGTCAAAAGGATTTCTGGCTTTTGGCTTAA 801 47.32 MKYDGPTLFHDEHQTPSPEMGKTGAKLPSFCLNRIRPHVRVPIQSKPDSVSVKTGPNKKADDSVDDIQVGAKPVLGIGRKIMIVVDSTIEAEGALHWALSHTVQNQDNILLLHLTKPSTKGPNFPPTFSLFSYLLGFTGEGVSKETAPRAYELVHSMRTLCQLKRPEVETEVAVVEGGKEKGAVIVEEARKRGASLLVLGQKKRSTTWRLLMVWAGHRWGSGGGGGVVEYCIQNASCMAIAVRRKSKKLGGYLITTKRQKDFWLLA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3515932 3517212 - Lsi04G003530.1 Lsi04g00353 660402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00353 266 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 79 246 - -
Lsi04g00353 266 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 11 266 - -
Lsi04g00353 266 MobiDBLite consensus disorder prediction 45 64 - -
Lsi04g00353 266 Pfam Universal stress protein family 79 243 IPR006016 -
Lsi04g00353 266 MobiDBLite consensus disorder prediction 1 23 - -
Lsi04g00353 266 CDD USP_Like 80 242 - -
Lsi04g00353 266 Gene3D HUPs 78 250 IPR014729 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00353 Lsi-Chr4:3515932 Lsi05g01778 Lsi-Chr5:25097068 2.64E-21 dispersed
Lsi02g00139 Lsi-Chr2:1157903 Lsi04g00353 Lsi-Chr4:3515932 7.68E-45 wgd
Lsi04g00353 Lsi-Chr4:3515932 Lsi06g01395 Lsi-Chr6:24522479 1.54E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00353 - - cmos:111458216 360.533