Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00355 ATGAGCAACTCTGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGCGACACTGTTCTTGCGTACAACCAGTCTCAGGTTGGGTTCTCCAATGATATTCGAAAGGGTGCATCCACATCGTCGAGTTCCACGTCCTCTTCAATGGCAAATGAGTCCCCTTCTCTAAATTTTGTTGTTAAACCCCCTGAGAAGAAACATAGACTGCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCAGCTGCTGGCTCGGCTTCTGGAACTCACAACCACGTAAGA 402 44.78 MSNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYNQSQVGFSNDIRKGASTSSSSTSSSMANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNHVR 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3547540 3550695 - Lsi04G003550.1 Lsi04g00355 660404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00355 134 PANTHER PROTEIN YABBY 6-RELATED 8 32 IPR006780 GO:0007275
Lsi04g00355 134 PANTHER PROTEIN YABBY 6-RELATED 40 130 IPR006780 GO:0007275
Lsi04g00355 134 Pfam YABBY protein 46 117 IPR006780 GO:0007275
Lsi04g00355 134 Gene3D High mobility group box domain 65 120 IPR036910 -
Lsi04g00355 134 MobiDBLite consensus disorder prediction 42 76 - -
Lsi04g00355 134 MobiDBLite consensus disorder prediction 42 65 - -
Lsi04g00355 134 PANTHER PROTEIN CRABS CLAW 8 32 - -
Lsi04g00355 134 PANTHER PROTEIN CRABS CLAW 40 130 - -
Lsi04g00355 134 SUPERFAMILY HMG-box 65 115 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00355 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219863 201.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00355 Lsi-Chr4:3547540 Lsi09g00397 Lsi-Chr9:4170250 2.37E-22 dispersed
Lsi04g00355 Lsi-Chr4:3547540 Lsi11g00326 Lsi-Chr11:3356594 4.90E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25125 PF04690 YABBY 1.20E-30 CL0114 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00355 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.280446 0.288514 0.489082 0.0 0.0 0.180023