Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00355 ATGAGCAACTCTGAAGATAAATCTTCCATGGATTTGGTTCAACCTTCTGACCACCTCTGTTATGTCAAATGCAACTTCTGCGACACTGTTCTTGCGTACAACCAGTCTCAGGTTGGGTTCTCCAATGATATTCGAAAGGGTGCATCCACATCGTCGAGTTCCACGTCCTCTTCAATGGCAAATGAGTCCCCTTCTCTAAATTTTGTTGTTAAACCCCCTGAGAAGAAACATAGACTGCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCAGCTGCTGGCTCGGCTTCTGGAACTCACAACCACGTAAGA 402 44.78 MSNSEDKSSMDLVQPSDHLCYVKCNFCDTVLAYNQSQVGFSNDIRKGASTSSSSTSSSMANESPSLNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSASGTHNHVR 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3547540 3550695 - Lsi04G003550.1 Lsi04g00355 660404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00355 134 PANTHER PROTEIN YABBY 6-RELATED 8 32 IPR006780 GO:0007275
Lsi04g00355 134 PANTHER PROTEIN YABBY 6-RELATED 40 130 IPR006780 GO:0007275
Lsi04g00355 134 Pfam YABBY protein 46 117 IPR006780 GO:0007275
Lsi04g00355 134 Gene3D High mobility group box domain 65 120 IPR036910 -
Lsi04g00355 134 MobiDBLite consensus disorder prediction 42 76 - -
Lsi04g00355 134 MobiDBLite consensus disorder prediction 42 65 - -
Lsi04g00355 134 PANTHER PROTEIN CRABS CLAW 8 32 - -
Lsi04g00355 134 PANTHER PROTEIN CRABS CLAW 40 130 - -
Lsi04g00355 134 SUPERFAMILY HMG-box 65 115 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00355 Lsi-Chr4:3547540 Lsi09g00397 Lsi-Chr9:4170250 2.37E-22 dispersed
Lsi04g00355 Lsi-Chr4:3547540 Lsi11g00326 Lsi-Chr11:3356594 4.90E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25125 PF04690 YABBY 1.20E-30 CL0114 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00355 K25796 - csv:101219863 201.445