Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00357 ATGGCTGTATGTGGGGATCATAAAGATAGAGAGGTGAGGATCCATGAAAGTTTGGAGGAGCTAAGTACTGATTTAGCTGACTATATTGCTGAATTATCAGAGGCATCTGTGAAAGAACGAGGAGTGTTTTCTATTGCGTTGTCTGGTGGTTCTCTGATTAGCTTAATGGGAAAGCTCTGTGAAGCTCCTTACAACAAGACTGTTGACTGGGCCAAGTGGTATATATTTTGGGCTGATGAACGTGTTGTTGCAAAAAGCCATGCCGACAGCAATTATAAGCTTGCAAAGGATAACCTTCTTTCCAAGGTGCCAATTGTTCCCAGTCATGTACACTCGATCAATGATTCGGTGTCAGCTGAGGAAGCTGCCGATGAGTACAAGTTCGTCATTCGACAGTTAGTTAAATCCCGGATCGTTAGTGTGTCGGATGTGAGTGACAGCCCCAAGTTTGACCTCATACTACTTGGAATGGGTTCTGATGGCCATGTTGCCTCATTATTCCCTAATCACTCAGTGCTTGAGGAGAAAGATGAATGGGTTGCCTTCATAACCGATTCTCCGAAACCTCCTCCAGAGAGAATCACCTTCACATTGCCTGTGATCAACTCTGCATCAAATGTGGCGATCGTTGTGACAGGTGAAAACAAAGCAGAGACCGTACATTTGGCGATCGATGATGTAGGAGCAGACTGCCCACTCCTACCTGCAAGGTTGGTACAGCCAAGGAAAGGAAAGTTGGCATGGTTTTTGGATAACCATGCTGCTTCAAAACTTGACAATTACCAATTTTCCGAGTAG 798 44.86 MAVCGDHKDREVRIHESLEELSTDLADYIAELSEASVKERGVFSIALSGGSLISLMGKLCEAPYNKTVDWAKWYIFWADERVVAKSHADSNYKLAKDNLLSKVPIVPSHVHSINDSVSAEEAADEYKFVIRQLVKSRIVSVSDVSDSPKFDLILLGMGSDGHVASLFPNHSVLEEKDEWVAFITDSPKPPPERITFTLPVINSASNVAIVVTGENKAETVHLAIDDVGADCPLLPARLVQPRKGKLAWFLDNHAASKLDNYQFSE 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3571581 3573756 - Lsi04G003570.1 Lsi04g00357 660406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00357 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE-RELATED 1 265 - -
Lsi04g00357 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE 1 265 IPR039104 -
Lsi04g00357 265 SUPERFAMILY NagB/RpiA/CoA transferase-like 11 260 IPR037171 -
Lsi04g00357 265 Gene3D - 7 261 - -
Lsi04g00357 265 TIGRFAM pgl: 6-phosphogluconolactonase 14 258 IPR005900 GO:0005975|GO:0006098|GO:0017057
Lsi04g00357 265 Coils Coil 18 38 - -
Lsi04g00357 265 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 18 248 IPR006148 GO:0005975
Lsi04g00357 265 CDD 6PGL 19 250 IPR005900 GO:0005975|GO:0006098|GO:0017057
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00357 Lsi-Chr4:3571581 Lsi09g00001 Lsi-Chr9:12968 4.42E-71 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00357 K01057 - csv:101210739 490.73