Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00358 ATGCGTGGTAACAGGATTGCTCATACTTTGCTCCATCGAGCTCGAATCGCCGCCGTTTCATCTTCACTCTCCTCCGTCAGAGCACCGTCTTCCATAGTCTTTGGCTCCGAAGCAACGTCTTCTCAAAGTGCTTGCTCCTCTTCCTCCCGTCGCGACCACGCATTCGCCTTTTCCCCCGCAGCAGCCCTGCGGTTACTCAATACCAATTCCTCTAAAGACTTTCAAGATGAAGTGAAAGAACATAATCCACTCCAGTATGGGAGGGATGAAGGGGAAGAAACCACAGATGGATGGGAAGAAGACGATGATCTGGAGCCTGAGCTTGGTGATGGAGGGGGAGGTGGTGGTATTGTTTTGCAAGGCGTGCCATGGGGTGAACATGTTCTTCTTCTTGCTCAAGAGGTCCTGCTGCAATTTGGCGATGACATAAAACTCTATTCTTTCAAGGTCACTCCACGTGGACTTGGTTGTCCCGGCCTGGAGGAGCTTGAAAGTTATAGCCAAGAGTACAAAAAACGATTAGATGAAACTGGAGCACTTGGAAAGATTCCCGATGATTTAGCTCTTGAGGTATCATCTCCAGGTGCAGAGAGATTACTGAAGGTCCCAGATGATCTGTTTAGATTTAAAGCCATGCCAATGCGAGTTTCCTACATTGAAGATTTAGACTCGAGAGGCACTGAAAATGATGGAGTTTTTATGCTGGATCATGTAGAATTGGAATCTGAGAGCTGTATCTGGAAATTGGCAAATGTGAGGGAAAACCGAGATCCTTTAAGTAAGGGTAGGCCTTTAAATCGTAAGCAGAAAGAATGGAGGTTAAAGTTACCGTACGAAAATCATAAGAAGGTATTCCTTTACCTTGAATGCTGA 873 46.16 MRGNRIAHTLLHRARIAAVSSSLSSVRAPSSIVFGSEATSSQSACSSSSRRDHAFAFSPAAALRLLNTNSSKDFQDEVKEHNPLQYGRDEGEETTDGWEEDDDLEPELGDGGGGGGIVLQGVPWGEHVLLLAQEVLLQFGDDIKLYSFKVTPRGLGCPGLEELESYSQEYKKRLDETGALGKIPDDLALEVSSPGAERLLKVPDDLFRFKAMPMRVSYIEDLDSRGTENDGVFMLDHVELESESCIWKLANVRENRDPLSKGRPLNRKQKEWRLKLPYENHKKVFLYLEC 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3585339 3587536 - Lsi04G003580.1 Lsi04g00358 660407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00358 290 MobiDBLite consensus disorder prediction 93 108 - -
Lsi04g00358 290 MobiDBLite consensus disorder prediction 79 112 - -
Lsi04g00358 290 PANTHER OS01G0594650 PROTEIN 17 289 - -
Lsi04g00358 290 PANTHER OSJNBA0006B20.18 PROTEIN 17 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00358 - - - csv:101211568 398.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00358 Lsi-Chr4:3585339 Lsi08g00523 Lsi-Chr8:13180314 1.36E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g24 Blo01g00458 . Bda01g02122 . . . . . . . . Cma18g01101 . Car18g01015 Sed06g1783 Cpe09g00225 . Bhi07g01479 Tan04g0982 Cmetu10g0201 . . . . Cla05g02388 . . Cco05g2634 Clacu05g2561 Cmu05g2418 Cre05g2536 . . . Cone9ag0533 Lsi04g00358 Csa05g02519 Chy10g01063 Cme10g00352 . . . . . Bpe02g02311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012986 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 3 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00358 Lsi_Chr04 FPKM 23.435389 28.938217 22.610813 21.269146 22.578096 24.030888 20.672253 22.14879 21.247955 19.545858