Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00360 ATGTGTGGAATCGCTTTGATCGTTTCTGGCATTCGCCTTGATTTATCATCTCTACATGTAGACGCCAGATTCCCGTCTCCTCATCCAGTTCACGAGCAAGTGAGTATTCTTCGGCTCGCCATTTTCTACTCATTCGGTTATAATTTTGGATATATTGTTGTGGCGCGAATTCGAATTGGCCGCATAACATTTTCTTTTTGGTTCTGGATTGATTTTAGTTTCGTTTTCTTGCTCCAGCTTGAGTTTTCGATAGATGATCTTAAAGCGGCATTACGGAGAAGAGGGCCCGATAGCTTAGGCGGAGCGAAGGTTTTTATTTCTTCAAAATCTTCTAATCCCGGTGATGAGCAGCAGTTTGAGTGTTTCATTGAGAGGGATGATGATGGCGTTGTATTCCAGAATCAAAATGATCAATACGAGATGGAAAATAGCCGCTTCTGTTCTGAAAATGGATGTATTCTCCAATCAGAGAACAGTTGCAGTAGTCCCATCTCTGGTGCGGAGTTTTATTTATTAGGGGCTACGTTACAGCTTAGAGGGCTTAGCCCTATTGTTCAGCCATTGATGGATGCTTCCCGCAATATTCTTGTTTACAATGGTGAAATATTTGGAGGAATACACGTTGAGTGTCATGAAAACGATGCTGAAACTCTTATGCTAGCTCTTGGGAATTGTTGCGCATGTAATTTTAGTTTAGATACGAACACATGTGAAGGTGAATGTAAGAGAGAAAGAACTACTGTAGATATTCTTTCAAAGATTCAAGGGCCATGGTCATTCATCTACTGGCAGGATAGTGCAAAAACTTTGTGGTTTGGTCGGGATGCCTTTGGTAGGCGAAGTCTTCTTGTTCACTGGCCAACAGTGGAGGATTCTCGGTTTCTGTTGTCGTCTGTATCACCAGCTTCTTCTATGTTTCACGACTCAGGGCTTGAAGATGATAATGGTACTTGTGAAGTGAGCTTCTGGGAAGAACTACCATGTGGGATTTACAGCATCTCTTTTGATGCTTGGAGAACTGACGGTGGCCTGGTTGGTGAAGTCAAAAGACATGAATGGACCAATGAGTCACTCAAAGAGCTTGTTGAGTGGAAAAGAACTCATATTGTACCTGAACCTGAAGACATCTCCACTCCATATCACAAGGATCTTTTGGCACAACATGAAAGCCACTCCGCATGTTTACGTAACTTGCAATCAGTATCTGGGAGTATCCAAGCTCCTGTCTCAACTCCTGCAGAGATTCTGCTGGATGCTCTAAGGAAGTCTCTAATCCGGCGGACTTCACTTTATACAATTTTCCAGGGTACAACATCTGCTTCCAAAAAAGCAGAACTTAGTCCAGTGGCGATTCTTTTTTCTGGTGGATTGGATTCTATGATACTAGCAGCATTACTGGATGAATGTCTAGATACCTGTTATGAGATAGATCTTCTTAATGTCAGCTTTGATGGTTGTTCTGCACCTGATCGAATCTCTGCTAAGGCTGGAGTTAAGGAACTGAGTAGAATTGCCCCTCTAAGAAGGCATTATATTATTGACCTCTATCTTGAGTGGAAGCTGGTTGAGATTGATGCTGATTTGTCAAATTTGACTACTGAAACCAAGCACGTCATGTCACTAATAAATCCTGCAAATACGTACATGGACCTGAATATTGGAATAGCTTTGTGGCTGGCCTCCGGTGGAAATGGTTGGATTTATGAATCAATTGACAAGGATGAGAAGTTTCATCAACGTGTAAAATACAAGTCAGAGGCCAAGATTCTCCTTGTTGGGTCTGGTGCCGATGAGCAATGTGCTGGCTATGGCAGGCATCGAACAAAATATAGACAAGGGGGCTGGCGTCTTTTAAATGAGGAAATGAAGTTGGATATCCAGAGAATCTGGAAGAGAAATCTAGGGAGAGATGACAGATGTATTGCAGATAATGGCAAGGAGGCTAGATTTCCCTTTCTGGATGAAGACGTTATACATACATTGCTAGCCTTTCCTTTATGGGAGGTTACCGACCTTGAGAAACCTGCTGGAACCGGTGATAAGAAGATACTTAGGGAGGTTGCGAAATTACTTGGTCTGCACGAAGCAGGAGCTCTACCTAAAAGAGCAATACAGTTTGGCTCAAGGATTGCAAGGGAATCAAACCGCAAGAACTTTGGAAGCAACCGGGCTGCTAATCAGGCCTCAGCAGGAAGTGTGAAGTTCAACAGACAATCTGTTCTTCAGTGA 2229 42.84 MCGIALIVSGIRLDLSSLHVDARFPSPHPVHEQVSILRLAIFYSFGYNFGYIVVARIRIGRITFSFWFWIDFSFVFLLQLEFSIDDLKAALRRRGPDSLGGAKVFISSKSSNPGDEQQFECFIERDDDGVVFQNQNDQYEMENSRFCSENGCILQSENSCSSPISGAEFYLLGATLQLRGLSPIVQPLMDASRNILVYNGEIFGGIHVECHENDAETLMLALGNCCACNFSLDTNTCEGECKRERTTVDILSKIQGPWSFIYWQDSAKTLWFGRDAFGRRSLLVHWPTVEDSRFLLSSVSPASSMFHDSGLEDDNGTCEVSFWEELPCGIYSISFDAWRTDGGLVGEVKRHEWTNESLKELVEWKRTHIVPEPEDISTPYHKDLLAQHESHSACLRNLQSVSGSIQAPVSTPAEILLDALRKSLIRRTSLYTIFQGTTSASKKAELSPVAILFSGGLDSMILAALLDECLDTCYEIDLLNVSFDGCSAPDRISAKAGVKELSRIAPLRRHYIIDLYLEWKLVEIDADLSNLTTETKHVMSLINPANTYMDLNIGIALWLASGGNGWIYESIDKDEKFHQRVKYKSEAKILLVGSGADEQCAGYGRHRTKYRQGGWRLLNEEMKLDIQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIHTLLAFPLWEVTDLEKPAGTGDKKILREVAKLLGLHEAGALPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVKFNRQSVLQ 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3596747 3602422 - Lsi04G003600.1 Lsi04g00360 660409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00360 742 Pfam Asparagine synthase 579 690 IPR001962 GO:0004066|GO:0006529
Lsi04g00360 742 Gene3D HUPs 409 738 IPR014729 -
Lsi04g00360 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 444 728 - -
Lsi04g00360 742 CDD Asn_Synthase_B_C 448 707 IPR001962 GO:0004066|GO:0006529
Lsi04g00360 742 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 88 302 IPR029055 -
Lsi04g00360 742 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 1 727 - -
Lsi04g00360 742 Pfam Glutamine amidotransferase domain 186 298 IPR017932 -
Lsi04g00360 742 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 79 312 IPR029055 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00360 - - bhj:120081619 1248.42