Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00361 ATGGGGGAATCAAACGGAGGAGGAAGTAGAGGAATGGAGAAAGTTCCTCTGCAAACTGAAAAATACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCAATTCACATCAGACCCAAATTCGGGCGTTTAATGAAGAAGAAGAAGAAGATGCAGAGGAGATTGAGCTTACTCTTGGGCTTTCACTAGGGGGTCGATTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGATCATCTTCCATAGCCGGTACCATGCTTTTGAGAGACGATGAGGCTTCTACTCCGGCAGCAGTATCGTACCCGGCGGCGCTTATTCGGACCTCGTCTCTTCCGCCGGAGACGGAGGAGGACTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCAAAAAGGAGGCGATTTGAGAAGCAGAGGAACAAGGATGGGATTGGGATGGGGACCGGCGGGTGTTTTGAAGAAGACAGACGCGGAATTGAAGGTCTTACAGGATTGAATTTGAGAGAGAAAAGGCCTGGTTCGGGTATTTCGACGGTGGCACCACCATTCGGGTTGCCGACGTGGGCTGCAGCTGCTCGACAGGCTCTTACTGGCGGAATTGTGGATGAGGTTGGCAAAGGCAAAGGTGACTGTACATCCGGTGGCGGTGGCACTGGTGGCGGAGGTTTACCGGGTGTCGGGCAGCCTGCCTCTCAGTGTTCCGCTGAATCGCAGGGCGGAAGCTCGTCGGGGATGTCGGAATTGGACAGTAAACACATCCAAGGATCAAGCAGTTACGGTGAAGCGAGAAGCTCCTCACAAGAGCGAGGCAACCCAGAGGCTGCAGGTTCTTCAGGATCGAAGATGTGCGAGAACCCATCTGACAGTTCCAAAACAGAGACAAAAAATGCATCCAAGAAACCCGATTCAGGTGAGAACAGGGGAAGAGAAGCGGGAACAACATCGATGGAAGACATGCCTTGTGTGTTCACGATAGGGGACGGGCCTGATGGGAGAAGGGTGGAAGGAATTCTTTATAAGTATGGAAAAGGGGAGGAAGTGAGGATAATGTGTGTTTGCCATGGGAAGTTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCATCCCTTAAGACATATAGTTGTCAATCCAAATTCTGGTCCTTTTTTGTGA 1176 50.51 MGESNGGGSRGMEKVPLQTEKYPTDLLQRFLCSNSHQTQIRAFNEEEEEDAEEIELTLGLSLGGRFGVDKNSKKLIRSSSIAGTMLLRDDEASTPAAVSYPAALIRTSSLPPETEEDWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGTGGCFEEDRRGIEGLTGLNLREKRPGSGISTVAPPFGLPTWAAAARQALTGGIVDEVGKGKGDCTSGGGGTGGGGLPGVGQPASQCSAESQGGSSSGMSELDSKHIQGSSSYGEARSSSQERGNPEAAGSSGSKMCENPSDSSKTETKNASKKPDSGENRGREAGTTSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPFL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3615606 3619041 + Lsi04G003610.1 Lsi04g00361 660410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00361 391 Pfam Tify domain binding domain 349 383 IPR032308 -
Lsi04g00361 391 MobiDBLite consensus disorder prediction 135 154 - -
Lsi04g00361 391 Pfam Ethylene-responsive binding factor-associated repression 49 83 IPR012463 -
Lsi04g00361 391 Pfam Putative nuclear localisation signal 104 252 IPR032310 -
Lsi04g00361 391 PANTHER NINJA-FAMILY PROTEIN AFP1 19 387 - -
Lsi04g00361 391 Coils Coil 120 140 - -
Lsi04g00361 391 MobiDBLite consensus disorder prediction 232 294 - -
Lsi04g00361 391 PANTHER AFP HOMOLOG 2 19 387 IPR031307 GO:0007165
Lsi04g00361 391 MobiDBLite consensus disorder prediction 295 309 - -
Lsi04g00361 391 MobiDBLite consensus disorder prediction 204 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00361 - - - csv:101220339 652.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00361 Lsi-Chr4:3615606 Lsi06g00830 Lsi-Chr6:17615345 6.91E-10 dispersed
Lsi05g01136 Lsi-Chr5:19121583 Lsi04g00361 Lsi-Chr4:3615606 1.64E-20 transposed
Lsi02g00120 Lsi-Chr2:987684 Lsi04g00361 Lsi-Chr4:3615606 3.58E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g33 . . . . . Bpe10g00900 Bma14g01666 Bma15g00131 Cmo04g01789 Cmo18g01124 . Cma18g01103 . Car18g01017 Sed06g1778 Cpe09g00223 Cpe01g01507 Bhi07g01484 Tan04g0992 Cmetu10g1842 Lac13g0380 Hepe10g1799 . . Cla05g02390 . . Cco05g2637 Clacu05g2564 Cmu05g2421 Cre05g2538 Cone13ag0904 Cone19ag0901 . . Lsi04g00361 Csa05g02516 Chy10g01060 Cme10g00355 Blo06g00928 Blo11g00794 . . . . . . . . . Cma04g01704 . Car04g01739 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006440 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00361 Lsi_Chr04 FPKM 2.072165 3.810856 17.21929 20.542902 8.014828 5.056037 5.568239 0.169775 0.071336 0.217829