Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00362 ATGTGGAAAAGAGTTCTGTGTTCATTTCCTCACAGATCGTTTTCCTCTGCACCAGAAACCCCATCTCTCTACTCCTTCCTCCAACCCTCCCTTTTTGCCCTAAAGAGAACCCCATTTTCGCCTTCTCAAGAATCCACCCACCTCCCTCAGGATCCAACTCCTCAAATTTTAACTCCAGACCGCGTCGCTGCCGTAGAAACAGCCCTCCACAAATCCCTTCTCACCAGCGACACTGATGAAGCATGGAAATCCTTCAAATTGCTCACAAGGAGCTCAGTTTTCCCATGTAAGTCTCTTACCAATTCACTTATTGCTCACTTGTCCTCAATTGGGGACGTTCATAATCTGAAAAGGGCTTTTGCATCTCTGGTGTTTGTTATTGAGAAGAAACCTGAACTTTTGGATTTTGGGTCTGTTAAAGCTTTATTGGCTTCTATGAAATGTGCCAACACTGCTGCCCCTGCCCTCTCTTTGATCAAATGCATGTTTAAGAATCGATGCTTCGTGCCTTTTAGTGTCTGGGGCAATGAACTTGTTGATATTTGCAGACAGAGTGGGAGTTTGATTCCCTTTTTAAGAGTTTTTGAAGAGAACTGTAGGATTGCTTTAGATGAGGGGTTGGATTTTATGAAACCAGACCTTATTGCTTGTAATGCAGCACTTGAAGGGTGTTGCCATGAGCTTGAATCTGTAACAGATGCCGAGAAAGTTGTTGAAACGATGTCACTTTTGTATCTTCGGCCTGATGAAGTGAGTTTTGGTGCTCTTGCTTATTTATATGCATTGAAGGGGCTTGAGCAGAAGATAATCGAGTTAGAAGTCTTGATGGGAAGTTTTGGTTTTACTCGTAAAGATCTTTTTTTTAGTAATTTGGTAAGTGGATACGTTAATGCGAGCAACTTTGCTGCTGTTTCCAAGACTATGTTGCGTAGTTTAAAAGATGAATGTGGAGCACATGTACATTTTGGTGAAAAAACGTATTTGGAAATGGTTAAGGGCTTTATTCAAAGTGGAAATCTGAAGGAATTATCTGCATTGATTGTCGATGCTCAGAATTTAGAGTCTTCATCAGAAGTTGATGGATCTATTGGTTTTGGTATCATCAATGCATGTGTTAATATTGGATGGTTAGATAAGGCACGTGACATTCTGAACGATATCAATTCCCAGGGAGTTTCTCTGGGCCTTGGAGTCTATCTGCCAATCTTGAAAGCTTACCGGAAGGAGCATCGAACAGCTGAAGCCACCCAATTAATCATGAATATTAGCAGTTCTGGGCTTCAGTTGGACGCAGAGAGTTATGATGCTCTAATAGAGGCATCAATGTCGAACCAAGATTTTCAGTCAGCTTTTGCTTTGTTTAGGAATATGAGAGAAACAAGAAAATCTGACACGAAAGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAACCATAGGCCTGAGTTGATGGCTGCCTTCTTAGACGAAGTTGTCGAAGATCCTCTTGTTGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGACTCGAGGATGCGAGGAGAACATTCCGAAGAATGAAATTTCTGCAGTTTGAACCAAACGAGCAGACCTTCTTGTCCCTAATTAATGGCTATGTGTCTGCAGAGAGATATTTCTGTGTTCTGATGCTGTGGAACGAACTTAAGTGGAAGGTTACAGCAGATGGGGAGAGAGGTATCAAACTTGACAACAACTTGGTTGATGCATTCCTGTATGCTTTGGTCAAAGGAGGTTTCTTCGATGCCGTGATGCAAGTCGTTGAAAAAACCAAGGATACCAAGATCTTCGTTGATAAGTGGAAATATAAGCAAGCATTCATGGAGACTCATAGGAAACTCAAAGTGGCAAAGTTGAGGAGGAGGAACCACAGGAAAATGGAATCATTAATTGCTTTCAAGAACTGGGCTGGTCTGAATGCTTGA 1968 41.62 MWKRVLCSFPHRSFSSAPETPSLYSFLQPSLFALKRTPFSPSQESTHLPQDPTPQILTPDRVAAVETALHKSLLTSDTDEAWKSFKLLTRSSVFPCKSLTNSLIAHLSSIGDVHNLKRAFASLVFVIEKKPELLDFGSVKALLASMKCANTAAPALSLIKCMFKNRCFVPFSVWGNELVDICRQSGSLIPFLRVFEENCRIALDEGLDFMKPDLIACNAALEGCCHELESVTDAEKVVETMSLLYLRPDEVSFGALAYLYALKGLEQKIIELEVLMGSFGFTRKDLFFSNLVSGYVNASNFAAVSKTMLRSLKDECGAHVHFGEKTYLEMVKGFIQSGNLKELSALIVDAQNLESSSEVDGSIGFGIINACVNIGWLDKARDILNDINSQGVSLGLGVYLPILKAYRKEHRTAEATQLIMNISSSGLQLDAESYDALIEASMSNQDFQSAFALFRNMRETRKSDTKASYLTIMTGLMENHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKVTADGERGIKLDNNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFVDKWKYKQAFMETHRKLKVAKLRRRNHRKMESLIAFKNWAGLNA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3625073 3627040 - Lsi04G003620.1 Lsi04g00362 660411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00362 655 Pfam Pentatricopeptide repeat domain 419 469 IPR002885 -
Lsi04g00362 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Lsi04g00362 655 PANTHER BNAC05G43320D PROTEIN 1 655 - -
Lsi04g00362 655 Pfam PPR repeat family 505 548 IPR002885 -
Lsi04g00362 655 TIGRFAM PPR: pentatricopeptide repeat domain 505 537 IPR002885 -
Lsi04g00362 655 Gene3D Tetratricopeptide repeat domain 474 653 IPR011990 GO:0005515
Lsi04g00362 655 Gene3D Tetratricopeptide repeat domain 62 353 IPR011990 GO:0005515
Lsi04g00362 655 Gene3D Tetratricopeptide repeat domain 354 473 IPR011990 GO:0005515
Lsi04g00362 655 PANTHER OS01G0788900 PROTEIN 1 655 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00362 - - - csv:101212045 1204.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00362 Lsi-Chr4:3625073 Lsi05g00037 Lsi-Chr5:643204 8.62E-34 dispersed
Lsi04g00362 Lsi-Chr4:3625073 Lsi03g02055 Lsi-Chr3:31865008 4.04E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g39 . . . . . . Bma14g01665 . . Cmo18g01126 . Cma18g01105 . Car18g01019 Sed06g1777 Cpe09g00221 . Bhi07g01488 Tan04g0995 Cmetu10g0618 Lac13g0378 Hepe10g1796 . . Cla05g02392 . . Cco05g2639 Clacu05g2566 Cmu05g2423 Cre05g2540 . . . Cone9ag0542 Lsi04g00362 Csa05g02513 Chy10g01058 Cme10g00357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011716 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00362 Lsi_Chr04 FPKM 5.949574 6.882601 3.796709 4.430715 3.28483 2.781892 3.951452 0.0 0.0 0.0