Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00365 | ATGGCTGTTTTCGTGTTCTTAGTGTTTTTTCTTGCCCTAACTGGACGATCTTATGCCAACTATTGCTTGTGTAGAGATGGGGTAAGCCAACAAGCCCTTCAGAAGGCACTGGACTATGCTTGTGGAGCTGGAGCTGACTGTTCTCCAATCCTTTCCAGTGGCGCTTGTTTTCAGCCCAACACTGTCAAAGATCACTGCAATTACGCTGTCAACAGTTATTTCCAGCGAAAGGGGCAAGTCCAAGGAAGCTGTGACTTCAGCGGCGCCGCCTCGCCTAGCGTTACCCTCACTGCCTCTGTGCCCTCTGGTTGTGTCTATCCTTCTAGCCCCAGCAATGCGGGAACATCACCGACGAACTCTGGCGGAACCACACCGACGATGACACCAGGGACGCCGTCGACGACGAATCCGGGAATGACGCCGACGGTGTTCGGCAACGGTATCAGCCCGAGCGGCTCCGGTTTCAACGACGGCAGCGCCGGCGTGGGTTTCAATGAAAATAGGAACTTGCTTTTGGCAGTGGGCCTAACTCTGTGGCTTTCCGTCTTGTTTCTCTGGGGATGA | 564 | 54.08 | MAVFVFLVFFLALTGRSYANYCLCRDGVSQQALQKALDYACGAGADCSPILSSGACFQPNTVKDHCNYAVNSYFQRKGQVQGSCDFSGAASPSVTLTASVPSGCVYPSSPSNAGTSPTNSGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGFNDGSAGVGFNENRNLLLAVGLTLWLSVLFLWG | 187 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3646987 | 3648226 | - | Lsi04G003650.1 | Lsi04g00365 | 660414 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00365 | 187 | Pfam | X8 domain | 21 | 91 | IPR012946 | - | |
| Lsi04g00365 | 187 | PANTHER | CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN | 1 | 174 | - | - | |
| Lsi04g00365 | 187 | Gene3D | - | 17 | 108 | - | - | |
| Lsi04g00365 | 187 | MobiDBLite | consensus disorder prediction | 109 | 140 | - | - | |
| Lsi04g00365 | 187 | SMART | X8_cls | 20 | 106 | IPR012946 | - | |
| Lsi04g00365 | 187 | PANTHER | BETA-1,3 GLUCANASE | 1 | 174 | IPR044788 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00365 | Lsi-Chr4:3646987 | Lsi09g01139 | Lsi-Chr9:18277785 | 5.23E-28 | dispersed | |
| Lsi02g00116 | Lsi-Chr2:944509 | Lsi04g00365 | Lsi-Chr4:3646987 | 2.39E-43 | wgd | |
| Lsi04g00365 | Lsi-Chr4:3646987 | Lsi06g01420 | Lsi-Chr6:24743658 | 1.58E-33 | wgd | |
| Lsi04g00365 | Lsi-Chr4:3646987 | Lsi08g00894 | Lsi-Chr8:17309129 | 6.65E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00365 | - | - | csv:101212531 | 319.701 |