Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00366 ATGGCTTCGATCACAACCGTAATTCAGTCTCCAATTCATCGGTTACCTTCCTTTCGATTGTCTTCTAATAGAACAGTTCCCGCCAATTCTTTCGCTCTTCAATGTCGATCACTTGCTTCTAAAGCTTTGAAATCGCCGTTTTCACCGTTGACGGAGAAACGAACTGTTTCGCCGTCGGTGGAACTATCTAGCAAGGTTATTGGGCTCTTAAGTTCTGGACAATCGTTAAAGTCTCGAAGTGTGGTTCGTCTGCCGGTGGTGAGGGCGGCTGCAGCTGATGCCGACGGAGCTTCCGATGGGTTGACTAGCCCTTCGAAGAGCTTTGCTGCAAGATTTCCAGCACTCATTACTGGTTTCTACTTCTTTATGTGCTTTGTCTCTGTCATACACCTTCTTGTTGGAGTTGGATATTGTCTCATTTCCTGGGCTGTAGGTCTGCCAAAACGTGCCCCGATGGATAAAGAGCTCTTGCTATTATTGACTCCAGTTTCACTATGTCATGCACTTGGACATGTGATGTCAAATGTTTCATTTGCAGCTGTTGCTGTGTCCTTCACTCACACCATTAAAGCTCTGGAGCCATTCTTTAACGCTGCTGCTTCTCAATTTGTTTTGGGACATCAAATTCCCTTCAGCTTGTGGCTTTCTCTAGCACCTGTTGTTTTAGGTGTGTCAATGGCATCACTAACGGAACTTTCCTTCAATTGGATTGGTTTTGTTAGTGCAATGATTTCAAACATTGCATTTACCTATAGAAGTATCTATTCGAAGAAGGCAATGATTGAGGGACCGCAGTTGCTGCAGCATGGTTTTAAGGATGCCATTGCCAGAGTGGGTCTACAAAAGTTCCTGTCTGATCTTTTCTGGATTGGCATGTTTTATCATCTATACAATCAGCTTGCCGCTAATACTCTTGAACGTGTTGCACCATTAACGCATGCTGTAGGAAACGTATTGAAGCGAGTTTTTGTGATTGGATTCTCCATTGTTGTTTTTGGCAATAAGATTTCAACTCAAACTGGAATTGGTACTACTATAGCAATTGCCGGTGTCGCCATCTACTCCTTGATTAAAGCAAACACGGAGGAGCAAAAACGGGTTCGCATTCACTCAAAATCTCAGCACATGCTTGAATTCCCAAACAACAAATCCTATCTGTCGTATTAA 1167 43.44 MASITTVIQSPIHRLPSFRLSSNRTVPANSFALQCRSLASKALKSPFSPLTEKRTVSPSVELSSKVIGLLSSGQSLKSRSVVRLPVVRAAAADADGASDGLTSPSKSFAARFPALITGFYFFMCFVSVIHLLVGVGYCLISWAVGLPKRAPMDKELLLLLTPVSLCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGHQIPFSLWLSLAPVVLGVSMASLTELSFNWIGFVSAMISNIAFTYRSIYSKKAMIEGPQLLQHGFKDAIARVGLQKFLSDLFWIGMFYHLYNQLAANTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTTIAIAGVAIYSLIKANTEEQKRVRIHSKSQHMLEFPNNKSYLSY 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3660619 3665444 - Lsi04G003660.1 Lsi04g00366 660415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00366 388 PANTHER TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC-LIKE ISOFORM X1 124 261 - -
Lsi04g00366 388 Pfam Triose-phosphate Transporter family 277 355 IPR004853 -
Lsi04g00366 388 Pfam Triose-phosphate Transporter family 124 262 IPR004853 -
Lsi04g00366 388 PANTHER SOLUTE CARRIER FAMILY 35 260 363 - -
Lsi04g00366 388 PANTHER SOLUTE CARRIER FAMILY 35 124 261 - -
Lsi04g00366 388 PANTHER TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC-LIKE ISOFORM X1 260 363 - -
Lsi04g00366 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 287 356 - -
Lsi04g00366 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 136 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00289 Lsi-Chr1:2560564 Lsi04g00366 Lsi-Chr4:3660619 2.79E-130 dispersed
Lsi04g00366 Lsi-Chr4:3660619 Lsi05g00617 Lsi-Chr5:7593979 1.36E-48 dispersed
Lsi04g00366 Lsi-Chr4:3660619 Lsi04g01225 Lsi-Chr4:18936200 1.36E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00366 K15283 - csv:101221040 540.421