Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00368 | ATGTCGTCCGCCGAGAAGGAAAGAGAGACGCAGGTCTACATGGCCAAGCTTGCAGAACAGGCTGAACGCTACGACGAAATGGTGGAGTGTATGAAGAAAGTTGCTAAACTAGATGTTGAGCTAACCGTGGAAGAGAGAAACTTGCTTTCTGTTGGATACAAAAATGTTATAGGTGCTAGGCGAGCTTCTTGGCGCATCATGTCCTCAATTGAACAGAAGGAAGAGTCCAAAAGCAATGAGAATAATGTTAAACTCATTAAGAGTTACCGTCAGAAGGTGGAGGAGGAGCTTTCCAAGATCTGTACCGATATTCTGACTATTATTGACAAGCACCTCATCCCTTCTTCAACCTCTTCTGAAGCGTCGACTGCTTCGAGCACCGCAAATACTGAACTTCCATCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTTTCTGTCTTCTACTATGAGATTATGAATTCCCCTGAAAGGGCTTGCCACTTGGCTAAACAAGCTTTTGACGAGGCAATTGCAGAGTTGGATACTTTGAGTGAGGAATCATACAAGGACAGTACCCTCATAATGCAGTTGCTGAGAGATAACCTCACTCTCTGGACATCTGATTTACCAGAAGATGGAGGTGAAGAGAACGTCAAAGGTGAGGATTCCAAACCGGCAGCACCAGCCCCCGAGGTAATTTTCTTTCGTGCATGA | 699 | 45.64 | MSSAEKERETQVYMAKLAEQAERYDEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKSNENNVKLIKSYRQKVEEELSKICTDILTIIDKHLIPSSTSSEASTASSTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENVKGEDSKPAAPAPEVIFFRA | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3674392 | 3676541 | - | Lsi04G003680.1 | Lsi04g00368 | 660417 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00368 | 232 | Pfam | 14-3-3 protein | 123 | 201 | IPR023410 | - | |
| Lsi04g00368 | 232 | Pfam | 14-3-3 protein | 14 | 121 | IPR023410 | - | |
| Lsi04g00368 | 232 | PANTHER | BNAC03G57490D PROTEIN | 4 | 122 | - | - | |
| Lsi04g00368 | 232 | ProSitePatterns | 14-3-3 proteins signature 2. | 183 | 202 | IPR023409 | - | |
| Lsi04g00368 | 232 | PANTHER | BNAC03G57490D PROTEIN | 124 | 219 | - | - | |
| Lsi04g00368 | 232 | Gene3D | - | 1 | 122 | IPR036815 | - | |
| Lsi04g00368 | 232 | Gene3D | - | 123 | 215 | IPR036815 | - | |
| Lsi04g00368 | 232 | MobiDBLite | consensus disorder prediction | 204 | 226 | - | - | |
| Lsi04g00368 | 232 | PANTHER | 14-3-3 PROTEIN | 124 | 219 | IPR000308 | - | |
| Lsi04g00368 | 232 | PANTHER | 14-3-3 PROTEIN | 4 | 122 | IPR000308 | - | |
| Lsi04g00368 | 232 | SUPERFAMILY | 14-3-3 protein | 7 | 203 | IPR036815 | - | |
| Lsi04g00368 | 232 | PRINTS | 14-3-3 protein zeta signature | 40 | 69 | IPR000308 | - | |
| Lsi04g00368 | 232 | PRINTS | 14-3-3 protein zeta signature | 89 | 113 | IPR000308 | - | |
| Lsi04g00368 | 232 | SMART | 1433_4 | 8 | 215 | IPR023410 | - | |
| Lsi04g00368 | 232 | ProSitePatterns | 14-3-3 proteins signature 1. | 46 | 56 | IPR023409 | - | |
| Lsi04g00368 | 232 | Coils | Coil | 14 | 34 | - | - | |
| Lsi04g00368 | 232 | PIRSF | 14-3-3 | 2 | 123 | IPR000308 | - | |
| Lsi04g00368 | 232 | PIRSF | 14-3-3 | 121 | 213 | IPR000308 | - | |
| Lsi04g00368 | 232 | Coils | Coil | 161 | 181 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00368 | Lsi-Chr4:3674392 | Lsi08g00896 | Lsi-Chr8:17327349 | 3.35E-148 | dispersed | |
| Lsi04g00368 | Lsi-Chr4:3674392 | Lsi04g02235 | Lsi-Chr4:29388901 | 5.96E-107 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00368 | K06630 | - | rcu:8282134 | 313.538 |