Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00370 | ATGGAGAATTCTAAAGAAAACAAGTTCGTCTGCAACTTTTGCCACAAGAGCTTCACGTGTGGGAAGTCCTTGGGAGGACATATCAGAATTCACAAGAATGAGAAATCATCCCGAGTTGCAGAGAAGCAAAGGGAAAGAAGCAGTATCTTGAAGTTTCAAGTTCCGACAGAGAGGAGAAGAAGCAAGAGAGATTTAGAATCGGAGGTTGCTAATGGGAATTCAGGCTATGGCTTGAGAGAGAACCCCAAAATAACACAGAGGTTTGCTGATTCGGGATTCAGTTCAAGGCAGGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTTCAGTCCTCAGAAGCTTTGAGTTGGCACTTGGCTTGTCACTCTGGAAACGAAAGGGAAAACAAAAGGCTTGAATATAATTATGGGATCACACATCAGAAGCGGGAGCTTATAGAAAATCGATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTCTGTGCTTGATGATGATGTCTAAAGCTCCAAGATTGGAAGGTCTGAATTCAGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTCATTTTAGGGAAAGTGACACATCTGCCTCTAACTCTAATGGAGGACTAGAAATGAAGGAAGTCACAGGTAGGATCAACAAGTTGGAAGTTTCTGAATTCGACTGTGACAATTCCGACTCTGAAAATTTCAGGAAAGAAGTCTGCAAGAAGGTTAAATTGAAAGTTTCTGTTCATCGGGCTCTTATGGATGAAGAATATAAGAAACCAGATTTCAAATTTGGAGTCAGGGTAGGCAGAGCAAGTGCAGATATTCTAAAGAATGCGATGAAAAATAAGAAAAATGATGATCAAGTGCATGCATCTTCTTACAAGTACGAGCTAAGAAAGAGGTTGAAAAATGAATCATACAGTCCTGATCTCTGGGAGGGATCCAGCAAGAAGATCCCTAGCGAGAACTTCCGTTTTCATGACAGAGAAACCTATACAAGAATGAGCAATGGCTGCGAGTGGACGCATCAGTCAGGTGAAAACAGCATAAATACCATTACCAATTACATCTCCATACCAGCTAGGGAGTTAACTGAGTCAAGCAATGGCAAAAACAAGGGTCACCAGGACACTTCTGGAAATGAAGAGAAGAAATTAGGGCCCAAGAGAAAACACAAGTGCCCAATTTGCTTCAAAGCCTTCAAATCAGGCCAGGCATTGGGGGGTCATAAGAGGTCCCATGTGGTCGGAAGTTTAGAGGATGCATCTATAGTGACAAGGCAAGAGTCCAATGGGATAACTGGTCTAATTGATCTAAATGTTCCTGCTCCTATGGAAGAAGAGGAAAATGGGAGATGGGATTAA | 1356 | 42.55 | MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSSRVAEKQRERSSILKFQVPTERRRSKRDLESEVANGNSGYGLRENPKITQRFADSGFSSRQEKFCRECGQGFQSSEALSWHLACHSGNERENKRLEYNYGITHQKRELIENRSDIPERVREAALCLMMMSKAPRLEGLNSAAESSDSKSSSRHFRESDTSASNSNGGLEMKEVTGRINKLEVSEFDCDNSDSENFRKEVCKKVKLKVSVHRALMDEEYKKPDFKFGVRVGRASADILKNAMKNKKNDDQVHASSYKYELRKRLKNESYSPDLWEGSSKKIPSENFRFHDRETYTRMSNGCEWTHQSGENSINTITNYISIPARELTESSNGKNKGHQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGITGLIDLNVPAPMEEEENGRWD | 451 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3694697 | 3696052 | + | Lsi04G003700.1 | Lsi04g00370 | 660419 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00370 | 451 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 446 | - | - | |
| Lsi04g00370 | 451 | MobiDBLite | consensus disorder prediction | 55 | 80 | - | - | |
| Lsi04g00370 | 451 | MobiDBLite | consensus disorder prediction | 173 | 207 | - | - | |
| Lsi04g00370 | 451 | Pfam | C2H2-type zinc finger | 101 | 121 | - | - | |
| Lsi04g00370 | 451 | Pfam | C2H2-type zinc finger | 389 | 411 | - | - | |
| Lsi04g00370 | 451 | Pfam | C2H2-type zinc finger | 9 | 31 | - | - | |
| Lsi04g00370 | 451 | Gene3D | Classic Zinc Finger | 1 | 71 | - | - | |
| Lsi04g00370 | 451 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 11 | 31 | IPR013087 | - | |
| Lsi04g00370 | 451 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 391 | 411 | IPR013087 | - | |
| Lsi04g00370 | 451 | MobiDBLite | consensus disorder prediction | 359 | 385 | - | - | |
| Lsi04g00370 | 451 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 101 | 121 | IPR013087 | - | |
| Lsi04g00370 | 451 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 99 | 126 | IPR013087 | - | |
| Lsi04g00370 | 451 | SUPERFAMILY | beta-beta-alpha zinc fingers | 5 | 36 | IPR036236 | - | |
| Lsi04g00370 | 451 | SUPERFAMILY | beta-beta-alpha zinc fingers | 100 | 411 | IPR036236 | - | |
| Lsi04g00370 | 451 | SMART | c2h2final6 | 389 | 411 | IPR013087 | - | |
| Lsi04g00370 | 451 | SMART | c2h2final6 | 9 | 31 | IPR013087 | - | |
| Lsi04g00370 | 451 | SMART | c2h2final6 | 99 | 121 | IPR013087 | - | |
| Lsi04g00370 | 451 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 389 | 411 | IPR013087 | - | |
| Lsi04g00370 | 451 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 9 | 36 | IPR013087 | - | |
| Lsi04g00370 | 451 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 446 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00370 | Lsi-Chr4:3694697 | Lsi07g01013 | Lsi-Chr7:14922145 | 1.01E-11 | dispersed | |
| Lsi02g00106 | Lsi-Chr2:860629 | Lsi04g00370 | Lsi-Chr4:3694697 | 1.35E-34 | wgd | |
| Lsi04g00370 | Lsi-Chr4:3694697 | Lsi06g01429 | Lsi-Chr6:24837405 | 3.22E-10 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25126 | PF13912 | zf-C2H2_6 | 6.30E-09 | CL0361 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00370 | - | - | csv:101221515 | 762.681 |