Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00370 ATGGAGAATTCTAAAGAAAACAAGTTCGTCTGCAACTTTTGCCACAAGAGCTTCACGTGTGGGAAGTCCTTGGGAGGACATATCAGAATTCACAAGAATGAGAAATCATCCCGAGTTGCAGAGAAGCAAAGGGAAAGAAGCAGTATCTTGAAGTTTCAAGTTCCGACAGAGAGGAGAAGAAGCAAGAGAGATTTAGAATCGGAGGTTGCTAATGGGAATTCAGGCTATGGCTTGAGAGAGAACCCCAAAATAACACAGAGGTTTGCTGATTCGGGATTCAGTTCAAGGCAGGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTTCAGTCCTCAGAAGCTTTGAGTTGGCACTTGGCTTGTCACTCTGGAAACGAAAGGGAAAACAAAAGGCTTGAATATAATTATGGGATCACACATCAGAAGCGGGAGCTTATAGAAAATCGATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTCTGTGCTTGATGATGATGTCTAAAGCTCCAAGATTGGAAGGTCTGAATTCAGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTCATTTTAGGGAAAGTGACACATCTGCCTCTAACTCTAATGGAGGACTAGAAATGAAGGAAGTCACAGGTAGGATCAACAAGTTGGAAGTTTCTGAATTCGACTGTGACAATTCCGACTCTGAAAATTTCAGGAAAGAAGTCTGCAAGAAGGTTAAATTGAAAGTTTCTGTTCATCGGGCTCTTATGGATGAAGAATATAAGAAACCAGATTTCAAATTTGGAGTCAGGGTAGGCAGAGCAAGTGCAGATATTCTAAAGAATGCGATGAAAAATAAGAAAAATGATGATCAAGTGCATGCATCTTCTTACAAGTACGAGCTAAGAAAGAGGTTGAAAAATGAATCATACAGTCCTGATCTCTGGGAGGGATCCAGCAAGAAGATCCCTAGCGAGAACTTCCGTTTTCATGACAGAGAAACCTATACAAGAATGAGCAATGGCTGCGAGTGGACGCATCAGTCAGGTGAAAACAGCATAAATACCATTACCAATTACATCTCCATACCAGCTAGGGAGTTAACTGAGTCAAGCAATGGCAAAAACAAGGGTCACCAGGACACTTCTGGAAATGAAGAGAAGAAATTAGGGCCCAAGAGAAAACACAAGTGCCCAATTTGCTTCAAAGCCTTCAAATCAGGCCAGGCATTGGGGGGTCATAAGAGGTCCCATGTGGTCGGAAGTTTAGAGGATGCATCTATAGTGACAAGGCAAGAGTCCAATGGGATAACTGGTCTAATTGATCTAAATGTTCCTGCTCCTATGGAAGAAGAGGAAAATGGGAGATGGGATTAA 1356 42.55 MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSSRVAEKQRERSSILKFQVPTERRRSKRDLESEVANGNSGYGLRENPKITQRFADSGFSSRQEKFCRECGQGFQSSEALSWHLACHSGNERENKRLEYNYGITHQKRELIENRSDIPERVREAALCLMMMSKAPRLEGLNSAAESSDSKSSSRHFRESDTSASNSNGGLEMKEVTGRINKLEVSEFDCDNSDSENFRKEVCKKVKLKVSVHRALMDEEYKKPDFKFGVRVGRASADILKNAMKNKKNDDQVHASSYKYELRKRLKNESYSPDLWEGSSKKIPSENFRFHDRETYTRMSNGCEWTHQSGENSINTITNYISIPARELTESSNGKNKGHQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGITGLIDLNVPAPMEEEENGRWD 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3694697 3696052 + Lsi04G003700.1 Lsi04g00370 660419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00370 451 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 446 - -
Lsi04g00370 451 MobiDBLite consensus disorder prediction 55 80 - -
Lsi04g00370 451 MobiDBLite consensus disorder prediction 173 207 - -
Lsi04g00370 451 Pfam C2H2-type zinc finger 101 121 - -
Lsi04g00370 451 Pfam C2H2-type zinc finger 389 411 - -
Lsi04g00370 451 Pfam C2H2-type zinc finger 9 31 - -
Lsi04g00370 451 Gene3D Classic Zinc Finger 1 71 - -
Lsi04g00370 451 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Lsi04g00370 451 ProSitePatterns Zinc finger C2H2 type domain signature. 391 411 IPR013087 -
Lsi04g00370 451 MobiDBLite consensus disorder prediction 359 385 - -
Lsi04g00370 451 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lsi04g00370 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Lsi04g00370 451 SUPERFAMILY beta-beta-alpha zinc fingers 5 36 IPR036236 -
Lsi04g00370 451 SUPERFAMILY beta-beta-alpha zinc fingers 100 411 IPR036236 -
Lsi04g00370 451 SMART c2h2final6 389 411 IPR013087 -
Lsi04g00370 451 SMART c2h2final6 9 31 IPR013087 -
Lsi04g00370 451 SMART c2h2final6 99 121 IPR013087 -
Lsi04g00370 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 389 411 IPR013087 -
Lsi04g00370 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Lsi04g00370 451 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00370 - - - csv:101221515 762.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00370 Lsi-Chr4:3694697 Lsi07g01013 Lsi-Chr7:14922145 1.01E-11 dispersed
Lsi02g00106 Lsi-Chr2:860629 Lsi04g00370 Lsi-Chr4:3694697 1.35E-34 wgd
Lsi04g00370 Lsi-Chr4:3694697 Lsi06g01429 Lsi-Chr6:24837405 3.22E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g59 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02400 Cam05g2576 Cec05g2610 Cco05g2648 Clacu05g2579 Cmu05g2433 Cre05g2550 . Cone19ag0908 Cone6ag0540 Cone9ag0550 Lsi04g00370 . . Cme10g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012570 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25126 PF13912 zf-C2H2_6 6.30E-09 CL0361 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00370 Lsi_Chr04 FPKM 40.977081 47.413235 24.150494 23.598644 19.930601 16.842621 16.023851 30.179398 29.57905 32.168354