Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00371 ATGACAAGACCACCAATGGCAGCATTGCGATTATCATCGTCCTGTGTTAATTCTAATAATCCACACTCCTCAAAACTCAAATTCCTCTCCACCTTCGCTCCAGAGTCTAGTTTCCGGACCAATTGGATAAGGCTTCTGTTGTTCAGAACTTCAGTCTCGAGTTCTGCAAGAAGGAAGCTGTGCATTAGGAACGTAGCCAGCGATCAACAGAAAGAACTGAAGGAGCCGGTCAACGGAGAAGACGACTTCGATAGCTTTCTTCCAGATTCGGCGTCCGTTGCTGCGAGTATTAAGTACCATTCGGAATTCACGCCTTCTTTCTCTCCGGAGGGCTTTGGGCTTTCTAAGACATACTATGCAACTGCTGAAAGTGTTCGTGATATGCTTATCATAAACTGGAATGCTACGTATGACTACTATGAAAAGATGAATGTGAAGCAAGCCTACTATCTGTCGATGGAGTTTTTACAGGGTAGAGCATTGCTAAATGCAATTGGAAATTTGGAACTATCAGGAATTTATGCAGATGCTTTAAGAGTGTTAGGATGTAATCTCGAGGAGGTAGCTCGGCAGGAATCGGATGCTGCTCTAGGAAATGGAGGATTAGGGCGGCTTGCTTCCTGCTTTCTGGACTCCCTGGCAACACTAAACTATCCAGCATGGGGATATGGACTCAGATACAAGTATGGTTTGTTCAAACAGCTCATTACAAAAGATGGACAGGAGGAAGTGGCTGAAAATTGGCTAGAGAAACCGGAAGCAAGTTTTGAGTGGTCTCATGATTCCTGTGTTGATCGATCAATTTTGTTTCATCAGATGGGCAATCCCTGGGAAATTGCAAGAAATGACATCTCCTGTCCTGTGAAATTCTATGGTGAAGTCATTTCAGGCCCAGATGGAAGTAAGCAATGGGTTGGAGGAGAAAATATCACTGCTGTTGCCTATGATGTCCCAATACCAGGTTATAAAACTAAAACCACCATAAACCTCCGTTTGTGGTCGACAAAGGTTGCTCCCGAACAATTTAATTTGAGTTCTTTCAATGTTGGAGATCATGCCAACGCATATGAAGCCATAAAGAAAGCTGAAAAGATCTGTTACGTACTGTACCCCGGAGACGAGTCACTGGAGGGAAAGACTCTTAGACTGAAACAACAATACACATTGTGCTCTGCTTCCCTTCAAGATATTGTCGCACGTTTCGAGAGGAGATCTGGGGAGGCTGTGGACTGGGAAAATTTTCCAGAAAAGGTTGCTGTGCAGATGAATGATACCCATCCTACACTTAGTATCCCTGAGCTGATAAGAATATTGATGGATGTGAAAGGGTTGACCTGGAAAGAAGCTTGGGACATCACTCGTAGAACTGTAGCGTATACAAATCATACAGTTCTGCCGGAGGCGCTGGAAAAATGGGGTTTCCCCCTCATGCAGGAATTACTTCCTCGACATGTTCAGATAATTGAAATGATTGACGAGGAGCTTATCCATTCAATCATTGCTAAATACGGAACAAAAGATCTTGAGTTGTTGCAACAAAAGCTGAAGCAAATGAGAGTTTTAGAAAATTTTGAATTACCAGACTCGGTAATGAAACTGCCAGTAAATTCAGCTGAGTCTGCGGTGGCAGTTGATCTCGTTGAGGAAGCTGAAATTCTGGATGAGGAATCGTTACCTGGTAAAGAAGGAGATGAGACTGAAGACAAAAGTATTGCAAAGAAAATAGATATTTCGTTTAAAGTTGATCCAAAGCATCCAAAGATGATTTGCATGGCTAATTTGTCTGTTGTTGGTGGATATGCTGTAAATGGTGTTGCTGAAATTCATAGTGAAATTGTTAGAACTGAAGTTTTTAGCGACTTCTATGAGTTGTGGCCTGAGAAATTTCAAAACAAAACGAATGGAGTGACACCGAGAAGATGGCTCCGTTTTTGCAATCCGGACCTGAGTAAAATCATCACAAAGTGGACTGGAACAGAGCACTGGGTGACAGATACTGAGAAACTGGCAATACTCCGAAAGTTCGCTGATAGCGAGGATCTTCAGTCCATGTGGAAGGAAGCTAAAATAATAAACAAATTGAAAGTTGTTTCTTTTCTTAAACAAAAAACTGGCTATTTAGTCAGCCCTGATGCAATGTTTGACGTACAGATAAAACGCATCCATGAATACAAGCGGCAGTTGATGAACATCCTGGGGATCGTCTATCGTTATAAACAAATGAAAGAAATGACTCTCGAGGAAAGAGAAGCCAAGTTTGTTCCCCGAGTTTGTATATTTGGGGGGAAAGCATTTGCTACATACATCCAGGCTAAAAGGATTGTGAAATTCATTGCTGATGTTGGAGCTACCATCAATAACGATCCTGATATAGGAGACCTTTTGAAGACAAACATTATCCAGTATTATTCTCTTGCCTCGGAAGTGTTTGCACCTAGAGAAACCAATGTTAGCTTGGTACTTCGGGCTTTAAAACATGTTGTCTTTGTTCCAGATTACAACGTGAGTGTAGCAGAATTGCTCATTCCTGGCAGTGATCTTTCCCAGCATATCAGCCTTCAATTGATTTTGAAGGTTGACCTTCAATATTACTTTTCTGGCTTTGGTACTGACTTCTGCACTGTATTTTTGCATGTCACGAAATTGATTTTGGAAAGCACGGCTGGAATGGAGGCCAGTGGTACCAGCAACATGAAGTTTGCAATGAATGGCTGTGTACTAATTGGAACATTAGATGGGGCAAATGTGGAGATAAGAGAAGAGGTTGGAGAAGACAACTTTTTCCTCTTTGGTGCAAGGGCTCATGAAATTGCTGGCCTAAGAAAAGAAAGAGCTGAAGGCAAGTTTGTTCCTGACCCACGGTTTGAGGAAGTGAAGGCCTTCGTAAGAAGTGGGGTTTTTTGTTCCAATAACTATGAAGAACTCATGGGATCTTTAGAAGGAAATGAAGGTTATGGTCGGGCAGACTATTTCCTCGTTGGCAAGGACTTCCCTAGTTACGTAGAGTGCCAAGACAGGGTTGATGAGGCCTATCGAGATCAAAAGGTAGCACCAGATTCTATACTCTCTAATGAACCATGTTGCTATGTCCTGATCAGATGGATCAAGATGTCGATCTTAAACACAGCTGGTTCATTCAAGTTCAGCAGTGACAGAACCATTCATGAGTATGCAAGAGACATATGGAAGATTTCTCCACTACTATTGCTATCTTAA 3216 42.16 MTRPPMAALRLSSSCVNSNNPHSSKLKFLSTFAPESSFRTNWIRLLLFRTSVSSSARRKLCIRNVASDQQKELKEPVNGEDDFDSFLPDSASVAASIKYHSEFTPSFSPEGFGLSKTYYATAESVRDMLIINWNATYDYYEKMNVKQAYYLSMEFLQGRALLNAIGNLELSGIYADALRVLGCNLEEVARQESDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEKPEASFEWSHDSCVDRSILFHQMGNPWEIARNDISCPVKFYGEVISGPDGSKQWVGGENITAVAYDVPIPGYKTKTTINLRLWSTKVAPEQFNLSSFNVGDHANAYEAIKKAEKICYVLYPGDESLEGKTLRLKQQYTLCSASLQDIVARFERRSGEAVDWENFPEKVAVQMNDTHPTLSIPELIRILMDVKGLTWKEAWDITRRTVAYTNHTVLPEALEKWGFPLMQELLPRHVQIIEMIDEELIHSIIAKYGTKDLELLQQKLKQMRVLENFELPDSVMKLPVNSAESAVAVDLVEEAEILDEESLPGKEGDETEDKSIAKKIDISFKVDPKHPKMICMANLSVVGGYAVNGVAEIHSEIVRTEVFSDFYELWPEKFQNKTNGVTPRRWLRFCNPDLSKIITKWTGTEHWVTDTEKLAILRKFADSEDLQSMWKEAKIINKLKVVSFLKQKTGYLVSPDAMFDVQIKRIHEYKRQLMNILGIVYRYKQMKEMTLEEREAKFVPRVCIFGGKAFATYIQAKRIVKFIADVGATINNDPDIGDLLKTNIIQYYSLASEVFAPRETNVSLVLRALKHVVFVPDYNVSVAELLIPGSDLSQHISLQLILKVDLQYYFSGFGTDFCTVFLHVTKLILESTAGMEASGTSNMKFAMNGCVLIGTLDGANVEIREEVGEDNFFLFGARAHEIAGLRKERAEGKFVPDPRFEEVKAFVRSGVFCSNNYEELMGSLEGNEGYGRADYFLVGKDFPSYVECQDRVDEAYRDQKVAPDSILSNEPCCYVLIRWIKMSILNTAGSFKFSSDRTIHEYARDIWKISPLLLLS 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3696582 3707691 - Lsi04G003710.1 Lsi04g00371 660420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00371 1071 ProSitePatterns Phosphorylase pyridoxal-phosphate attachment site. 891 903 IPR035090 -
Lsi04g00371 1071 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 822 853 - -
Lsi04g00371 1071 PANTHER ALPHA-1,4 GLUCAN PHOSPHORYLASE L-2 ISOZYME, CHLOROPLASTIC/AMYLOPLASTIC 886 1069 - -
Lsi04g00371 1071 CDD GT35_Glycogen_Phosphorylase 96 1064 - -
Lsi04g00371 1071 Gene3D Glycogen Phosphorylase B; 639 855 - -
Lsi04g00371 1071 PANTHER GLYCOGEN PHOSPHORYLASE 824 852 IPR000811 GO:0005975|GO:0008184
Lsi04g00371 1071 PANTHER GLYCOGEN PHOSPHORYLASE 37 812 IPR000811 GO:0005975|GO:0008184
Lsi04g00371 1071 PANTHER GLYCOGEN PHOSPHORYLASE 886 1069 IPR000811 GO:0005975|GO:0008184
Lsi04g00371 1071 Gene3D Glycogen Phosphorylase B; 880 1049 - -
Lsi04g00371 1071 Gene3D Glycogen Phosphorylase B; 83 638 - -
Lsi04g00371 1071 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 886 1066 - -
Lsi04g00371 1071 PANTHER ALPHA-1,4 GLUCAN PHOSPHORYLASE L-2 ISOZYME, CHLOROPLASTIC/AMYLOPLASTIC 824 852 - -
Lsi04g00371 1071 PANTHER ALPHA-1,4 GLUCAN PHOSPHORYLASE L-2 ISOZYME, CHLOROPLASTIC/AMYLOPLASTIC 37 812 - -
Lsi04g00371 1071 Pfam Carbohydrate phosphorylase 180 257 IPR000811 GO:0005975|GO:0008184
Lsi04g00371 1071 Pfam Carbohydrate phosphorylase 271 805 IPR000811 GO:0005975|GO:0008184
Lsi04g00371 1071 Pfam Carbohydrate phosphorylase 886 1064 IPR000811 GO:0005975|GO:0008184
Lsi04g00371 1071 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 89 805 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00371 Lsi-Chr4:3696582 Lsi07g01015 Lsi-Chr7:14957201 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00371 K00688 - csv:101221746 1695.25