Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00375 ATGGCAACAATGGCTTCCAAAGCTTTGTTCCTCGTTCTCATTTGCTTCTTTTCATTTTCATCTTCCATTTTAGCAGAATTTGTTAAAGTTTCAGTGAAAGGAGTGACCACCATTGCTGAAACTGACAATGATTTCATTTGTGCTACTTTGGATTGGTGGCCTGCAAATAAATGCGATTATGGCCAATGCCCATGGGGAAAAGCCGGCCTTCCCAATTTGGATCTTCAGAACGTTATCTTGACCAACGCAATCAAGGAGTTCAATCCTTTGAGAATCCGACTTGGAGGATCACTTCAAGATCAAATCATTTACAGAGTTGGAAACTCAGTGAAGAAGTGTCCTCAAATGAAGAAACAGAGTGATGGTTTGTTTGGATTCAGCAAAGGTTGCTTCACCATGGAAAGATGGGATGATCTTAATGAGCTATTCAATAAAACATCAGCTCGAATTACGTTTGGTTTGAACGCTCTGATGGGAAAAACACCAGCCAATGATGGAAGTATTAACTGGGTTGGTGATTGGGATCCTCGTAATGCTCGAGATTTCATTCGATACACTGCTTCTAAAGGATACAAAATCGATTCTTATGAACTGGGAAATGAGCTTAGTGCAAGCGGAGTTTCGGCAAGGGTTGAGCCAGATCAATATGGAAAAGATCTGACTCTAATGAGAAAAATAGTTGAAGAAGTGTATCCTGATGCCAACAACAGACCCAAAATTCTGGGACCAGCTGGTTTCTTTGACAAAGAATGGTTCAAAACTTTCCTTCAAAACACTGCCCCAAATGTTGTGGATGGAGTCACTCACCATATTTACAATCTTGGAGCAGATATTGATAAGTGCATAATGATATATATATATGTAGGTGTTGATCCTAATCTTATAAACAAGGTTCAAGACCCTTATGTTTTGGACCAAATTGCTCAAACTTTTAAGGAAGCTATGGAAGTTTCACAGAGCTTTGGGCCATGGTCTAAGCCTTGGATTGGTGAATCTGGTGGTGCTTATAACAGTGGTGGCAGAACTGTTTCTCATACTTTTGCCGATGGATTCTGGTTTAATTTCTAA 1068 39.89 MATMASKALFLVLICFFSFSSSILAEFVKVSVKGVTTIAETDNDFICATLDWWPANKCDYGQCPWGKAGLPNLDLQNVILTNAIKEFNPLRIRLGGSLQDQIIYRVGNSVKKCPQMKKQSDGLFGFSKGCFTMERWDDLNELFNKTSARITFGLNALMGKTPANDGSINWVGDWDPRNARDFIRYTASKGYKIDSYELGNELSASGVSARVEPDQYGKDLTLMRKIVEEVYPDANNRPKILGPAGFFDKEWFKTFLQNTAPNVVDGVTHHIYNLGADIDKCIMIYIYVGVDPNLINKVQDPYVLDQIAQTFKEAMEVSQSFGPWSKPWIGESGGAYNSGGRTVSHTFADGFWFNF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3720243 3721912 + Lsi04G003750.1 Lsi04g00375 660424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00375 355 PANTHER OS07G0598400 PROTEIN 22 353 - -
Lsi04g00375 355 PANTHER HEPARANASE-RELATED 22 353 - -
Lsi04g00375 355 Pfam Glycosyl hydrolase family 79, N-terminal domain 28 353 IPR005199 GO:0016020|GO:0016798
Lsi04g00375 355 SUPERFAMILY (Trans)glycosidases 41 352 IPR017853 -
Lsi04g00375 355 Gene3D Glycosidases 67 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00375 Lsi-Chr4:3720243 Lsi05g01574 Lsi-Chr5:23510268 1.45E-96 dispersed
Lsi02g00100 Lsi-Chr2:821665 Lsi04g00375 Lsi-Chr4:3720243 1.36E-125 wgd
Lsi04g00375 Lsi-Chr4:3720243 Lsi06g01434 Lsi-Chr6:24870711 4.09E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00375 K07964 - csv:101214214 605.905