Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00380 ATGGGAACAAAGGTGCAGTATGAAAGTTATTTGCCAGGATATCACTCAATGAGGGATCTAAATGAAGATTCTCATGGTTGTAGCTGGCCTTTATATTACAGTGAAAAAGCATGTCAGAGCGGTCAATACTATAATGGAATTTTGCCAAGAGCTACCTCCGATGCATATCTAGGTTGTGATAGAGATGCTGTGAAGAGGACAATGCTTGAGCATGAAGCCATTTTCAAGAACCAGGTTCGTGAGCTGCATCGGTTATATATAAAACAGAGAGAGTTAATGAATGATGTTAAAAGATCAGAACACAGACACGCGATACCAGTGGACATATCATTCTCATCTAGTCCTCTAGCATCTCAAAGTACTCCCGATGGTGCAAGGAAATGGCACCTCCCAAGCTTTCCTCTTGCAATTTCTTCAAGTGGACCATCTGTACCTGGCATTGAAGATGTGAAATCATCTTTGAGTTCTTTGAAAGAAAACAATAGAAGTGATGGTCTCTTACCATCCCAAAATGGAACTAGTTCAAAAGACTGCGAGGTATTAGAATCTAGACCCTCAAAGGCTAGGAGGAAAACTTTTGATCTTCAACTTCCAGCACATGAGTACATTGATAGCGAAGAGGGGGAGGTATTTCATGATGAAAAAGTGGCTCCCACGTTGTTTTTCCATTCAAATTGTAACAAGAAATTTGAGACTCAGAGTTGTGTGACGGAAAATTTGAATGTGAATCCTGGTGAAAAAAGTGGTGGCCAAAGTTCTGCTTTGAGAACTGACTCGTGTTTATGGAACAGATATGGTTTGGCTGACTTGAATGAGCCCGTTCAGGTTGAAGAGGCAAATGGGTCCAATTTTTTTGATCTTCCTAGTGCTCGTGACTCCAGCAATGGGGAGACTCAAGGCCCCACTGTATCGTCTACGAAGCAAGAAATTTTTCTGAGCAATGAAGGTGGACATGCAACAAATAGGAATTCGTATATTGAGAATGGAAATAGAAGAGAGGCATTTCTTAACATCTTTGAAGCAGGACGTAGTAAGGAAAGTGAGAAATCTTTTACTCATGGTCAGATGGAAAAGTTCCATTTATCTTCTAATCCTTTGCAAGTTCCACTTAACAAGTTTCATGAACTTCCAGTTTTCTATCTCAATGATAAAAGCAAGGTTCAACAAGATTTGGACAGGCCAGTTAATAATTTGCCATTATCCAAAAGAAGTTATGAAATGTCCAATACTGGGGATCCTGGTTATCTTTTAGCTTCTCAGACATCTCGTACATATCAAATTTCTCCTTCTTTGGACGTGGGCAAGTCTTGGGCTCACTCCAGTTCATCTTGGGAAAAGTCAAATGGAAACAGCTCCCAAAAGACGACATCAGGTCATACACAGCCGTGTTTCAAATCGTCTACTGCTGTTCACAAGAGTTTTCCTTCATCAGCTCAGAACAATGGAATTTTTGGAGATAGATGGCATTTGAGTAGTGACTCTAGATCAAACCCTGGGTCTGGTTGTGAAACTCCTTACCAGAATGGATTCTATTTCGGGTCTACATCTGGTTCCAACGGGGGAGTTCTCTCCTCTACCATAAGGCATGACCATGGGGCAAACTATTACAAGGGCTCCGGTTGTGTGGGCATGAATTCTCCAAAAGACGTTAACTTGAATGTAGTGCTCTCAAAAAGTTTATCAAATGAGGCAGGTCAACAACCAAACTACCGGACCAGAGAGGCAGAAGAAAACAATGAGGACCATCATAATGTATTACCATGGACAAGGGCTGTACCTGCTAGTAAGAACGAAATGATCAATTCAAGAAGACTCTCTACGACTGCAGAGCTTAATTTTGTGCTCTCACCAATGAAACAATTTTCTGACAGAAACGAAACTGAAAATGGCAGTAAAGTTATATGTTATCCAAACATCGAGTCTAATTCACATTGTAGTAACATTGAGCCGAGAATGTCTGAACACGGTGAATGCCAGAGCCAGAGTAACCGAAAACTTCTTGGGTTTCCCATTTTTGAAGGGCCACACATTTCTAAGAATGAATCATTTTCTCTTACATCCCCATCAGCACCTCCTCCTAATCCATCTGAGAATGAAGTGGAAGATAACCGGAAAACTAGAGTACTTGATATCAATTTGCCTTGTGATCTGTCAGTTTTTGAGTCAGACAATGCTACTACCGGAGCTCTGGCTGTAGAGAATGTAAAGGACACAAGGATCTCTACTGTGAGAGTTGATATTGATTTGAACTCATGTGTCAGCGATGATGAACCATCTATGAGACCTCTACCCCTGGATTCTTCAAGTGGCAAGGAAAAGGTAGTGGTAGAGATAGATTTAGAAGCCCCAGCAATGCCTGAGTCTGAAGACGACATAATTGCAGAAGAAGAATCTTTAGAAAAACAGCATGAACAGCAACCGCAATCTCCTCAGCACAAGGCTGTTGATATTCAGGATGATCTTATGGCTTTAGCAGCAGAGGCAATACTTGCTATCTCTTCTTGTGGTCACTCCTGTCATTTGGATGATAGTGTTAGCAATGCGTTGGAAGATTCTTCAAGCGACCCCCTAAATTGGTTTGCTGAGATAGTTTCCACACATGGAGATGATGTACAGACCAAGTCTGACACTGTATTGAGATCCAAAGAAGGCAAGGATATTGAGGAATCCTCTTTGAGAGGGATTGATTATTTCGAATATATGACTTTGAGGCTGGCGGAGGTCGGTGAAGAAGACTACATGCCTAAGCCCTTGGTTCCAGAAAATATGGAAATTGAAGATACTGGAACCAATTTGTTGCAAAGTCGGCCCCGAAAGGGCCAGACGAGGAGAGGTAGGCAGAGAAGGGACTTCCAGAAGGACATCCTTCCAGGCCTTTCATCTCTATCAAGGCATGAGGTTACAGAAGATCTTCAGACATTTGGTGGCCTAATGCGAGCGACGGGCCACTCTTGGCATTCCGGAGTTACGCGGAGGAACTCTACTAGAAACGGTTGTGGTAGGGGAAGACGACGATCAGTGATCAGTCCCCCGCCCCCTGTGCAATCAGCATGTAATCAGCTGATACAGCAACTAAGTAACATTGAAATGGGTCTGGAAGATGGAAGCCTGACTGGTTGGGGCAAGACAACTAGACGGCCCCGTCGGCAGAGATGCCCGGCCGGTAACCCTCCGGCTGTCCCTTTAACTTAA 3192 42.92 MGTKVQYESYLPGYHSMRDLNEDSHGCSWPLYYSEKACQSGQYYNGILPRATSDAYLGCDRDAVKRTMLEHEAIFKNQVRELHRLYIKQRELMNDVKRSEHRHAIPVDISFSSSPLASQSTPDGARKWHLPSFPLAISSSGPSVPGIEDVKSSLSSLKENNRSDGLLPSQNGTSSKDCEVLESRPSKARRKTFDLQLPAHEYIDSEEGEVFHDEKVAPTLFFHSNCNKKFETQSCVTENLNVNPGEKSGGQSSALRTDSCLWNRYGLADLNEPVQVEEANGSNFFDLPSARDSSNGETQGPTVSSTKQEIFLSNEGGHATNRNSYIENGNRREAFLNIFEAGRSKESEKSFTHGQMEKFHLSSNPLQVPLNKFHELPVFYLNDKSKVQQDLDRPVNNLPLSKRSYEMSNTGDPGYLLASQTSRTYQISPSLDVGKSWAHSSSSWEKSNGNSSQKTTSGHTQPCFKSSTAVHKSFPSSAQNNGIFGDRWHLSSDSRSNPGSGCETPYQNGFYFGSTSGSNGGVLSSTIRHDHGANYYKGSGCVGMNSPKDVNLNVVLSKSLSNEAGQQPNYRTREAEENNEDHHNVLPWTRAVPASKNEMINSRRLSTTAELNFVLSPMKQFSDRNETENGSKVICYPNIESNSHCSNIEPRMSEHGECQSQSNRKLLGFPIFEGPHISKNESFSLTSPSAPPPNPSENEVEDNRKTRVLDINLPCDLSVFESDNATTGALAVENVKDTRISTVRVDIDLNSCVSDDEPSMRPLPLDSSSGKEKVVVEIDLEAPAMPESEDDIIAEEESLEKQHEQQPQSPQHKAVDIQDDLMALAAEAILAISSCGHSCHLDDSVSNALEDSSSDPLNWFAEIVSTHGDDVQTKSDTVLRSKEGKDIEESSLRGIDYFEYMTLRLAEVGEEDYMPKPLVPENMEIEDTGTNLLQSRPRKGQTRRGRQRRDFQKDILPGLSSLSRHEVTEDLQTFGGLMRATGHSWHSGVTRRNSTRNGCGRGRRRSVISPPPPVQSACNQLIQQLSNIEMGLEDGSLTGWGKTTRRPRRQRCPAGNPPAVPLT 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3734945 3741771 - Lsi04G003800.1 Lsi04g00380 660429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00380 1063 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED 1 1062 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 286 306 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 984 1014 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 438 476 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 680 702 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 1033 1063 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 158 178 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 283 306 - -
Lsi04g00380 1063 Pfam Plant protein of unknown function (DUF863) 141 1053 IPR008581 -
Lsi04g00380 1063 PANTHER - 1 1062 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00380 - - - bhj:120080916 1922.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00912 Lsi-Chr1:7392850 Lsi04g00380 Lsi-Chr4:3734945 6.15E-06 dispersed
Lsi04g00380 Lsi-Chr4:3734945 Lsi09g00405 Lsi-Chr9:4266226 7.84E-08 dispersed
Lsi06g01190 Lsi-Chr6:22211676 Lsi04g00380 Lsi-Chr4:3734945 6.04E-08 transposed
Lsi02g00095 Lsi-Chr2:798991 Lsi04g00380 Lsi-Chr4:3734945 1.51E-14 wgd
Lsi04g00380 Lsi-Chr4:3734945 Lsi08g00883 Lsi-Chr8:17219422 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g80 Blo01g00444 . Bda01g02136 . . Bpe10g00891 . Bma15g00139 Cmo04g01769 Cmo18g01141 . Cma18g01120 . Car18g01032 Sed06g1491 Cpe09g00208 Cpe01g01494 Bhi07g01518 Tan04g1031 Cmetu10g0795 Lac13g0357 Hepe10g1779 . . Cla05g02409 Cam05g2586 Cec05g2618 Cco05g2658 Clacu05g2588 Cmu05g2442 Cre05g2559 . . Cone6ag0549 Cone9ag0559 Lsi04g00380 Csa05g02495 Chy10g01043 Cme10g00377 . Blo11g00790 . . . Bpe02g02325 Bma01g00114 . . . . Cma04g01688 . Car04g01725 . . Cpe07g00079 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001421 1 6 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 8 3 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00380 Lsi_Chr04 FPKM 9.029505 8.232202 7.879775 7.387079 7.744787 7.473414 7.709079 15.024956 13.40812 14.065573