Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00380 ATGGGAACAAAGGTGCAGTATGAAAGTTATTTGCCAGGATATCACTCAATGAGGGATCTAAATGAAGATTCTCATGGTTGTAGCTGGCCTTTATATTACAGTGAAAAAGCATGTCAGAGCGGTCAATACTATAATGGAATTTTGCCAAGAGCTACCTCCGATGCATATCTAGGTTGTGATAGAGATGCTGTGAAGAGGACAATGCTTGAGCATGAAGCCATTTTCAAGAACCAGGTTCGTGAGCTGCATCGGTTATATATAAAACAGAGAGAGTTAATGAATGATGTTAAAAGATCAGAACACAGACACGCGATACCAGTGGACATATCATTCTCATCTAGTCCTCTAGCATCTCAAAGTACTCCCGATGGTGCAAGGAAATGGCACCTCCCAAGCTTTCCTCTTGCAATTTCTTCAAGTGGACCATCTGTACCTGGCATTGAAGATGTGAAATCATCTTTGAGTTCTTTGAAAGAAAACAATAGAAGTGATGGTCTCTTACCATCCCAAAATGGAACTAGTTCAAAAGACTGCGAGGTATTAGAATCTAGACCCTCAAAGGCTAGGAGGAAAACTTTTGATCTTCAACTTCCAGCACATGAGTACATTGATAGCGAAGAGGGGGAGGTATTTCATGATGAAAAAGTGGCTCCCACGTTGTTTTTCCATTCAAATTGTAACAAGAAATTTGAGACTCAGAGTTGTGTGACGGAAAATTTGAATGTGAATCCTGGTGAAAAAAGTGGTGGCCAAAGTTCTGCTTTGAGAACTGACTCGTGTTTATGGAACAGATATGGTTTGGCTGACTTGAATGAGCCCGTTCAGGTTGAAGAGGCAAATGGGTCCAATTTTTTTGATCTTCCTAGTGCTCGTGACTCCAGCAATGGGGAGACTCAAGGCCCCACTGTATCGTCTACGAAGCAAGAAATTTTTCTGAGCAATGAAGGTGGACATGCAACAAATAGGAATTCGTATATTGAGAATGGAAATAGAAGAGAGGCATTTCTTAACATCTTTGAAGCAGGACGTAGTAAGGAAAGTGAGAAATCTTTTACTCATGGTCAGATGGAAAAGTTCCATTTATCTTCTAATCCTTTGCAAGTTCCACTTAACAAGTTTCATGAACTTCCAGTTTTCTATCTCAATGATAAAAGCAAGGTTCAACAAGATTTGGACAGGCCAGTTAATAATTTGCCATTATCCAAAAGAAGTTATGAAATGTCCAATACTGGGGATCCTGGTTATCTTTTAGCTTCTCAGACATCTCGTACATATCAAATTTCTCCTTCTTTGGACGTGGGCAAGTCTTGGGCTCACTCCAGTTCATCTTGGGAAAAGTCAAATGGAAACAGCTCCCAAAAGACGACATCAGGTCATACACAGCCGTGTTTCAAATCGTCTACTGCTGTTCACAAGAGTTTTCCTTCATCAGCTCAGAACAATGGAATTTTTGGAGATAGATGGCATTTGAGTAGTGACTCTAGATCAAACCCTGGGTCTGGTTGTGAAACTCCTTACCAGAATGGATTCTATTTCGGGTCTACATCTGGTTCCAACGGGGGAGTTCTCTCCTCTACCATAAGGCATGACCATGGGGCAAACTATTACAAGGGCTCCGGTTGTGTGGGCATGAATTCTCCAAAAGACGTTAACTTGAATGTAGTGCTCTCAAAAAGTTTATCAAATGAGGCAGGTCAACAACCAAACTACCGGACCAGAGAGGCAGAAGAAAACAATGAGGACCATCATAATGTATTACCATGGACAAGGGCTGTACCTGCTAGTAAGAACGAAATGATCAATTCAAGAAGACTCTCTACGACTGCAGAGCTTAATTTTGTGCTCTCACCAATGAAACAATTTTCTGACAGAAACGAAACTGAAAATGGCAGTAAAGTTATATGTTATCCAAACATCGAGTCTAATTCACATTGTAGTAACATTGAGCCGAGAATGTCTGAACACGGTGAATGCCAGAGCCAGAGTAACCGAAAACTTCTTGGGTTTCCCATTTTTGAAGGGCCACACATTTCTAAGAATGAATCATTTTCTCTTACATCCCCATCAGCACCTCCTCCTAATCCATCTGAGAATGAAGTGGAAGATAACCGGAAAACTAGAGTACTTGATATCAATTTGCCTTGTGATCTGTCAGTTTTTGAGTCAGACAATGCTACTACCGGAGCTCTGGCTGTAGAGAATGTAAAGGACACAAGGATCTCTACTGTGAGAGTTGATATTGATTTGAACTCATGTGTCAGCGATGATGAACCATCTATGAGACCTCTACCCCTGGATTCTTCAAGTGGCAAGGAAAAGGTAGTGGTAGAGATAGATTTAGAAGCCCCAGCAATGCCTGAGTCTGAAGACGACATAATTGCAGAAGAAGAATCTTTAGAAAAACAGCATGAACAGCAACCGCAATCTCCTCAGCACAAGGCTGTTGATATTCAGGATGATCTTATGGCTTTAGCAGCAGAGGCAATACTTGCTATCTCTTCTTGTGGTCACTCCTGTCATTTGGATGATAGTGTTAGCAATGCGTTGGAAGATTCTTCAAGCGACCCCCTAAATTGGTTTGCTGAGATAGTTTCCACACATGGAGATGATGTACAGACCAAGTCTGACACTGTATTGAGATCCAAAGAAGGCAAGGATATTGAGGAATCCTCTTTGAGAGGGATTGATTATTTCGAATATATGACTTTGAGGCTGGCGGAGGTCGGTGAAGAAGACTACATGCCTAAGCCCTTGGTTCCAGAAAATATGGAAATTGAAGATACTGGAACCAATTTGTTGCAAAGTCGGCCCCGAAAGGGCCAGACGAGGAGAGGTAGGCAGAGAAGGGACTTCCAGAAGGACATCCTTCCAGGCCTTTCATCTCTATCAAGGCATGAGGTTACAGAAGATCTTCAGACATTTGGTGGCCTAATGCGAGCGACGGGCCACTCTTGGCATTCCGGAGTTACGCGGAGGAACTCTACTAGAAACGGTTGTGGTAGGGGAAGACGACGATCAGTGATCAGTCCCCCGCCCCCTGTGCAATCAGCATGTAATCAGCTGATACAGCAACTAAGTAACATTGAAATGGGTCTGGAAGATGGAAGCCTGACTGGTTGGGGCAAGACAACTAGACGGCCCCGTCGGCAGAGATGCCCGGCCGGTAACCCTCCGGCTGTCCCTTTAACTTAA 3192 42.92 MGTKVQYESYLPGYHSMRDLNEDSHGCSWPLYYSEKACQSGQYYNGILPRATSDAYLGCDRDAVKRTMLEHEAIFKNQVRELHRLYIKQRELMNDVKRSEHRHAIPVDISFSSSPLASQSTPDGARKWHLPSFPLAISSSGPSVPGIEDVKSSLSSLKENNRSDGLLPSQNGTSSKDCEVLESRPSKARRKTFDLQLPAHEYIDSEEGEVFHDEKVAPTLFFHSNCNKKFETQSCVTENLNVNPGEKSGGQSSALRTDSCLWNRYGLADLNEPVQVEEANGSNFFDLPSARDSSNGETQGPTVSSTKQEIFLSNEGGHATNRNSYIENGNRREAFLNIFEAGRSKESEKSFTHGQMEKFHLSSNPLQVPLNKFHELPVFYLNDKSKVQQDLDRPVNNLPLSKRSYEMSNTGDPGYLLASQTSRTYQISPSLDVGKSWAHSSSSWEKSNGNSSQKTTSGHTQPCFKSSTAVHKSFPSSAQNNGIFGDRWHLSSDSRSNPGSGCETPYQNGFYFGSTSGSNGGVLSSTIRHDHGANYYKGSGCVGMNSPKDVNLNVVLSKSLSNEAGQQPNYRTREAEENNEDHHNVLPWTRAVPASKNEMINSRRLSTTAELNFVLSPMKQFSDRNETENGSKVICYPNIESNSHCSNIEPRMSEHGECQSQSNRKLLGFPIFEGPHISKNESFSLTSPSAPPPNPSENEVEDNRKTRVLDINLPCDLSVFESDNATTGALAVENVKDTRISTVRVDIDLNSCVSDDEPSMRPLPLDSSSGKEKVVVEIDLEAPAMPESEDDIIAEEESLEKQHEQQPQSPQHKAVDIQDDLMALAAEAILAISSCGHSCHLDDSVSNALEDSSSDPLNWFAEIVSTHGDDVQTKSDTVLRSKEGKDIEESSLRGIDYFEYMTLRLAEVGEEDYMPKPLVPENMEIEDTGTNLLQSRPRKGQTRRGRQRRDFQKDILPGLSSLSRHEVTEDLQTFGGLMRATGHSWHSGVTRRNSTRNGCGRGRRRSVISPPPPVQSACNQLIQQLSNIEMGLEDGSLTGWGKTTRRPRRQRCPAGNPPAVPLT 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3734945 3741771 - Lsi04G003800.1 Lsi04g00380 660429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00380 1063 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED 1 1062 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 286 306 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 984 1014 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 438 476 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 680 702 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 1033 1063 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 158 178 - -
Lsi04g00380 1063 MobiDBLite consensus disorder prediction 283 306 - -
Lsi04g00380 1063 Pfam Plant protein of unknown function (DUF863) 141 1053 IPR008581 -
Lsi04g00380 1063 PANTHER - 1 1062 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00912 Lsi-Chr1:7392850 Lsi04g00380 Lsi-Chr4:3734945 6.15E-06 dispersed
Lsi04g00380 Lsi-Chr4:3734945 Lsi09g00405 Lsi-Chr9:4266226 7.84E-08 dispersed
Lsi06g01190 Lsi-Chr6:22211676 Lsi04g00380 Lsi-Chr4:3734945 6.04E-08 transposed
Lsi02g00095 Lsi-Chr2:798991 Lsi04g00380 Lsi-Chr4:3734945 1.51E-14 wgd
Lsi04g00380 Lsi-Chr4:3734945 Lsi08g00883 Lsi-Chr8:17219422 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00380 - - bhj:120080916 1922.9