Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00383 ATGAAAGATTTACATGAGCATAATACTGAAGAAAATCACAACCCATCTGAGTATTCAACAAAGCTTTTTCTTCCCACAGGAAAGCCATTGAAGAGCTTGCCGGATTTACTTCGCGAGTACAACTTACCACCCGGCCTCTTTCCTCAGAACATGACCTGCTATGAATTTGATGAATCTACATCCAGGCTGATTGTCTACTTACCATCCGTTTGTGAGATTAGCTTCAAGGATTCCTCTGTAGTCAGATATGCAACAAGGGTGAAAGGAACTCTTCAGAGAGGGAAGCTTACAAGCATTGAAGGAATGAAGACAAAAGTCCTTGTGTGGGTGAAAGTGACAAGCGTGTCGGTTGAGGGCTACAAATCTGATAAGGTCTGGTTCACAGCAGGAGTGAAGAAGTCGAGATCGAAAGATGCATATGAAAAGCCCCATGACGCCGTTAGGGTAGAAGAATTCTGA 459 43.36 MKDLHEHNTEENHNPSEYSTKLFLPTGKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATRVKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDAVRVEEF 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3789205 3789802 + Lsi04G003830.1 Lsi04g00383 660432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00383 152 PANTHER - 26 152 - -
Lsi04g00383 152 PANTHER T31J12.3 PROTEIN-RELATED 26 152 IPR007493 -
Lsi04g00383 152 MobiDBLite consensus disorder prediction 1 20 - -
Lsi04g00383 152 Gene3D - 20 152 IPR036758 -
Lsi04g00383 152 SUPERFAMILY At5g01610-like 25 151 IPR036758 -
Lsi04g00383 152 Pfam Protein of unknown function, DUF538 35 141 IPR007493 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00383 - - - csv:101214933 234.572
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00383 Lsi-Chr4:3789205 Lsi10g00975 Lsi-Chr10:14096723 4.55E-11 dispersed
Lsi01g01575 Lsi-Chr1:13945469 Lsi04g00383 Lsi-Chr4:3789205 1.51E-44 transposed
Lsi02g02166 Lsi-Chr2:28096889 Lsi04g00383 Lsi-Chr4:3789205 1.67E-14 transposed
Lsi04g01261 Lsi-Chr4:19721771 Lsi04g00383 Lsi-Chr4:3789205 2.02E-07 transposed
Lsi05g00648 Lsi-Chr5:8241465 Lsi04g00383 Lsi-Chr4:3789205 8.02E-09 transposed
Lsi11g00966 Lsi-Chr11:15186963 Lsi04g00383 Lsi-Chr4:3789205 3.67E-12 transposed
Lsi02g00093 Lsi-Chr2:786202 Lsi04g00383 Lsi-Chr4:3789205 1.09E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g988 Blo01g00443 . Bda01g02137 . . . . . Cmo04g01768 Cmo18g01142 . Cma18g01121 . Car18g01033 Sed06g1493 Cpe09g00207 Cpe01g01493 Bhi07g01520 Tan04g1033 Cmetu10g0314 Lac13g0354 Hepe10g1778 . . Cla05g02411 Cam05g2589 Cec05g2621 Cco05g2660 Clacu05g2590 Cmu05g2444 . . . . . Lsi04g00383 Csa05g02493 Chy10g01041 Cme10g00378 . . . . . Bpe02g02326 Bma01g00113 . . . . Cma04g01687 . Car04g01724 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002962 1 2 1 1 1 2 1 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 1 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00383 Lsi_Chr04 FPKM 12.848519 11.19753 13.453266 11.108953 11.607783 13.71911 14.21439 24.071949 24.941633 19.803715