Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00386 | ATGGGTGACGATGATGAACAGCCGCCGCCGTCCAAATCGTTGAGACCCACTATTAATCTGCCTCCACGGACTTCTATGGAGTCCCTCTTCAGCGGTGGGCCGGGTTTGGGATTTGGGTTTAGCCCAGGACCGATGACCCTCGTCTCCAGCTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCGTCGCCGGTGGCTGCCGTTCCTCCGTCGGCGTCTGAGTTTAAGGCTTCTACCGGTCTGCTCGATTCTCCGGGGCTTTTTTCGTCTGGTCAAGGACCTTTTGGAATGACACATCAGCAAACTTTGGCTCAGGTTACTATGCAGGCTGCAGAAACCTATTCTCATAATCAAATACAAGCAGCCCCTTTTTCTTCATCAGTAGCGCTATCTGCATCCTCTTCGCAGCTTTTGACATCCTTTCCGGGTGAGAAGACTAAAGATCAGCCGATGCAACCTCCATTCCAGAACTCTGCAGTTGCGTCCAAGGAGCCATCGGATAACTCTCAATCAGAGCAGAGATTGCAGTCTTCTTCGTGTAATGTTGATAGGCCTGCTGATGATGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTATAAGTGCACACACCCAAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGACAAGTCATCGAAATTATCTACAAGGGCGAGCACAATCATAAACGACCTCAACCGAACAAGCGGGCAAAAGATGTTGGAAATTCTAACGGATATTCAAGTATTCATCGAAAGCCTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTTAACGAGCAGACATCTGTCTCTTCCATTGCAAAGAAGGATCAAGAATCAAGTCATGTTACAAATGAACAGTTGTCGGGGACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAATCGAAAAGATGAAGATGAACCTGATGCCAAGAGACGGAATACTGAGGTTAGAATTTCTGAGCCAACATCTTCTCATAGAACTCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTGGATGATGGCTACAGGTGGCGTAAGTATGGGCAGAAAATTGTTAAAGGCAACCCTTACCCCAGGAGCTATTATAAATGCACGACTCCAGGATGCAATGTTCGTAAACATGTGGAGAGAGCTTCAACGGACCCGAAAGCTGTCATAACGACGTACGAAGGTAAACACAATCATGATGTTCCAGCTGGTAAAATCAGCAGCCACAGTTCACTCAACAGTAACATTACTCAGCTAAAATCACAAAATATAGTTACTGAGAGGAATTTTTCAAGTAACAACACTGATCCGGGGAACTCTGGTCAACAGCCTGCTGGACTTTTACGGTTAAAGGAAGAACAAATAACTTAG | 1467 | 45.67 | MGDDDEQPPPSKSLRPTINLPPRTSMESLFSGGPGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAAVPPSASEFKASTGLLDSPGLFSSGQGPFGMTHQQTLAQVTMQAAETYSHNQIQAAPFSSSVALSASSSQLLTSFPGEKTKDQPMQPPFQNSAVASKEPSDNSQSEQRLQSSSCNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVIEIIYKGEHNHKRPQPNKRAKDVGNSNGYSSIHRKPELSSQVQSGYLNKFNEQTSVSSIAKKDQESSHVTNEQLSGTSDGEGGSEIETGVNRKDEDEPDAKRRNTEVRISEPTSSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAGKISSHSSLNSNITQLKSQNIVTERNFSSNNTDPGNSGQQPAGLLRLKEEQIT | 488 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3802108 | 3805649 | + | Lsi04G003860.1 | Lsi04g00386 | 660435 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00386 | 488 | MobiDBLite | consensus disorder prediction | 259 | 323 | - | - | |
Lsi04g00386 | 488 | ProSiteProfiles | WRKY domain profile. | 195 | 253 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi04g00386 | 488 | SUPERFAMILY | WRKY DNA-binding domain | 366 | 434 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi04g00386 | 488 | SUPERFAMILY | WRKY DNA-binding domain | 193 | 253 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi04g00386 | 488 | MobiDBLite | consensus disorder prediction | 244 | 358 | - | - | |
Lsi04g00386 | 488 | PANTHER | WRKY TRANSCRIPTION FACTOR 58-RELATED | 12 | 487 | - | - | |
Lsi04g00386 | 488 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Lsi04g00386 | 488 | MobiDBLite | consensus disorder prediction | 148 | 204 | - | - | |
Lsi04g00386 | 488 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 12 | 487 | IPR044810 | GO:0003700 | |
Lsi04g00386 | 488 | SMART | WRKY_cls | 374 | 433 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi04g00386 | 488 | SMART | WRKY_cls | 194 | 252 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi04g00386 | 488 | Gene3D | WRKY domain | 178 | 254 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi04g00386 | 488 | Gene3D | WRKY domain | 359 | 435 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi04g00386 | 488 | MobiDBLite | consensus disorder prediction | 148 | 192 | - | - | |
Lsi04g00386 | 488 | Pfam | WRKY DNA -binding domain | 375 | 431 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi04g00386 | 488 | Pfam | WRKY DNA -binding domain | 195 | 251 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi04g00386 | 488 | MobiDBLite | consensus disorder prediction | 244 | 258 | - | - | |
Lsi04g00386 | 488 | MobiDBLite | consensus disorder prediction | 461 | 488 | - | - | |
Lsi04g00386 | 488 | MobiDBLite | consensus disorder prediction | 325 | 349 | - | - | |
Lsi04g00386 | 488 | ProSiteProfiles | WRKY domain profile. | 369 | 434 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00151 | Lsi-Chr3:2121727 | Lsi04g00386 | Lsi-Chr4:3802108 | 5.02E-154 | dispersed | |
Lsi03g02063 | Lsi-Chr3:31952033 | Lsi04g00386 | Lsi-Chr4:3802108 | 1.73E-64 | dispersed | |
Lsi04g00386 | Lsi-Chr4:3802108 | Lsi07g01425 | Lsi-Chr7:20782000 | 6.32E-83 | dispersed | |
Lsi11g01628 | Lsi-Chr11:24630520 | Lsi04g00386 | Lsi-Chr4:3802108 | 3.54E-17 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25128 | PF03106 | WRKY | 8.30E-26 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00386 | - | - | cmo:103489160 | 833.172 |