Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00386 ATGGGTGACGATGATGAACAGCCGCCGCCGTCCAAATCGTTGAGACCCACTATTAATCTGCCTCCACGGACTTCTATGGAGTCCCTCTTCAGCGGTGGGCCGGGTTTGGGATTTGGGTTTAGCCCAGGACCGATGACCCTCGTCTCCAGCTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCGTCGCCGGTGGCTGCCGTTCCTCCGTCGGCGTCTGAGTTTAAGGCTTCTACCGGTCTGCTCGATTCTCCGGGGCTTTTTTCGTCTGGTCAAGGACCTTTTGGAATGACACATCAGCAAACTTTGGCTCAGGTTACTATGCAGGCTGCAGAAACCTATTCTCATAATCAAATACAAGCAGCCCCTTTTTCTTCATCAGTAGCGCTATCTGCATCCTCTTCGCAGCTTTTGACATCCTTTCCGGGTGAGAAGACTAAAGATCAGCCGATGCAACCTCCATTCCAGAACTCTGCAGTTGCGTCCAAGGAGCCATCGGATAACTCTCAATCAGAGCAGAGATTGCAGTCTTCTTCGTGTAATGTTGATAGGCCTGCTGATGATGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTATAAGTGCACACACCCAAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGACAAGTCATCGAAATTATCTACAAGGGCGAGCACAATCATAAACGACCTCAACCGAACAAGCGGGCAAAAGATGTTGGAAATTCTAACGGATATTCAAGTATTCATCGAAAGCCTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTTAACGAGCAGACATCTGTCTCTTCCATTGCAAAGAAGGATCAAGAATCAAGTCATGTTACAAATGAACAGTTGTCGGGGACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAATCGAAAAGATGAAGATGAACCTGATGCCAAGAGACGGAATACTGAGGTTAGAATTTCTGAGCCAACATCTTCTCATAGAACTCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTGGATGATGGCTACAGGTGGCGTAAGTATGGGCAGAAAATTGTTAAAGGCAACCCTTACCCCAGGAGCTATTATAAATGCACGACTCCAGGATGCAATGTTCGTAAACATGTGGAGAGAGCTTCAACGGACCCGAAAGCTGTCATAACGACGTACGAAGGTAAACACAATCATGATGTTCCAGCTGGTAAAATCAGCAGCCACAGTTCACTCAACAGTAACATTACTCAGCTAAAATCACAAAATATAGTTACTGAGAGGAATTTTTCAAGTAACAACACTGATCCGGGGAACTCTGGTCAACAGCCTGCTGGACTTTTACGGTTAAAGGAAGAACAAATAACTTAG 1467 45.67 MGDDDEQPPPSKSLRPTINLPPRTSMESLFSGGPGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAAVPPSASEFKASTGLLDSPGLFSSGQGPFGMTHQQTLAQVTMQAAETYSHNQIQAAPFSSSVALSASSSQLLTSFPGEKTKDQPMQPPFQNSAVASKEPSDNSQSEQRLQSSSCNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVIEIIYKGEHNHKRPQPNKRAKDVGNSNGYSSIHRKPELSSQVQSGYLNKFNEQTSVSSIAKKDQESSHVTNEQLSGTSDGEGGSEIETGVNRKDEDEPDAKRRNTEVRISEPTSSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAGKISSHSSLNSNITQLKSQNIVTERNFSSNNTDPGNSGQQPAGLLRLKEEQIT 488
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 3802108 3805649 + Lsi04G003860.1 Lsi04g00386 660435
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00386 488 MobiDBLite consensus disorder prediction 259 323 - -
Lsi04g00386 488 ProSiteProfiles WRKY domain profile. 195 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g00386 488 SUPERFAMILY WRKY DNA-binding domain 366 434 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi04g00386 488 SUPERFAMILY WRKY DNA-binding domain 193 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi04g00386 488 MobiDBLite consensus disorder prediction 244 358 - -
Lsi04g00386 488 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 12 487 - -
Lsi04g00386 488 MobiDBLite consensus disorder prediction 1 33 - -
Lsi04g00386 488 MobiDBLite consensus disorder prediction 148 204 - -
Lsi04g00386 488 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 487 IPR044810 GO:0003700
Lsi04g00386 488 SMART WRKY_cls 374 433 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g00386 488 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g00386 488 Gene3D WRKY domain 178 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi04g00386 488 Gene3D WRKY domain 359 435 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi04g00386 488 MobiDBLite consensus disorder prediction 148 192 - -
Lsi04g00386 488 Pfam WRKY DNA -binding domain 375 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g00386 488 Pfam WRKY DNA -binding domain 195 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi04g00386 488 MobiDBLite consensus disorder prediction 244 258 - -
Lsi04g00386 488 MobiDBLite consensus disorder prediction 461 488 - -
Lsi04g00386 488 MobiDBLite consensus disorder prediction 325 349 - -
Lsi04g00386 488 ProSiteProfiles WRKY domain profile. 369 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00151 Lsi-Chr3:2121727 Lsi04g00386 Lsi-Chr4:3802108 5.02E-154 dispersed
Lsi03g02063 Lsi-Chr3:31952033 Lsi04g00386 Lsi-Chr4:3802108 1.73E-64 dispersed
Lsi04g00386 Lsi-Chr4:3802108 Lsi07g01425 Lsi-Chr7:20782000 6.32E-83 dispersed
Lsi11g01628 Lsi-Chr11:24630520 Lsi04g00386 Lsi-Chr4:3802108 3.54E-17 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25128 PF03106 WRKY 8.30E-26 CL0274 Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00386 - - cmo:103489160 833.172