Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00391 ATGAGCTTTGAACATTCCGGAACTGCCGCCGGTTCGCCGGCGCCGGGGAGCACCGGAGGCAAGCGAAACTCGTCGTCGTCATCGGCGTCGGGGACGAGCAAGGAGAAGCAAAAAGAGAAAGCAAGAGTGAGTAGAACGTCACTGATATTGTGGCACGCTCACCAGAATGATTCTTCTGCTGTTCGCAAGCTCCTGGAGGAGGATCAATCCCTTGTCCATGCTAGAGATTACGACAGCCGCACTCCTCTTCATGTTGCATCGCTTCATGGTTGGATCGACGTTGCCAAGTGTTTGATTGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACTCCGCTAGCTGATGCGGAAGGAGCTAAAAAACATGGCATGATTGAGCTATTAAAATCGTATGGTGGCCTTTCCTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCTCCTCCTCTGCCAAATAAATGTGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATCATTGGCAAGGGGTCCTTCGGGGAAATTTTGAAAGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAACGTATTCTTCCGTCACTTTCAGATGATAGACTTGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAACCACTTATGTTAATCACTGAATACTTAAGAGGGGGTGATCTTCACCAGTACCTCAAGGACAAAGGTTCGCTCAGTCCTGCAACGGCCATCAATTTTGCACTGGACATCGCCAGGGGAATGGCTTATCTCCACAATGAGCCAAATGTTATAATTCACCGTGATCTAAAACCAAGGAACGTTCTTTTAGTCAATTCTGGTGCGGACCATCTAAAAGTTGGTGATTTCGGTCTAAGCAAGCTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACTGGCGAGACCGGGAGCTACCGGTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTGGATGTGTTTTCCTTTGCGATGATATTATACGAGATGCTTGAGGGAGACCCTCCACTGGCAAATTATGAGCCATACGAAGCTGCCAAGTATGTGGCTGAAGGTCATAGACCGATGTTCCGTGCGAAAGGATACCTTCCTGTTCTGAGAGACAATGTGGTGTTTAGTGGAGCAATGGAAGTTAGATCTGAGGGTATACAGGTCAGGTCCGATAAACTCCCAGCTCCTGTAATTCCGAGGACCCGTTTGCAGGTTTGGTTTGTTCGTGTTTGTTCCAGCATTTTGCTTTGGACATTTTTGGTTCAGCTTGTTGCATTTGGGAAGCTATGGCATCCCCTTTTTATATCCAATATAACCAATCGGATTTCGCAAGTTACTGGGATTCCGCTCTCTCTACACGTCGAAGAGTCTATTCAATCAACGCCGCTTCTTCCAGCAAGAAACTATTCAAGTAATGGTTATCTTCGGGTGTCCTGCAATGGAGGCTTAAACCAGATGCGTGCTGCGATCTGTGATATGGTGACCGTTGCTCGCCTTTTGAACTTGACATTGGTTGTTCCAGAACTTGATAAAACATCTTTTTGGGCGGACCCTAGCAATTTTGATGACATATTTAATGTGAACCATTTTATTGATTCACTGAGAGACGAAGTCCGCATTGTCAGGAGACTACCCAAAAAGCTCAATAGGAAATATGGGTTTACACCATTTTCCATGCCTCCAGTTAGCTGGTCAAATGAAAAATATTATTTAGAACAGTGGTCTCACTGGTACTCTGGCCATGGACTACTGTCAACTTTTTGTTGCCTTTACTTGAACCTAGTGACGCCACCTGCCCCCCCATACTGGAGTGAAAACTCATTTCTGTTCACTCTCAGAGAGATTATACAGCCTTATATAGATCTCTTAGAGGATTGTTATTGTACCAAACATTCTCCAAAATCTTCTGGAAGTATCATCACCCACACTATTCTTCCTCTCGTCAAGAAGCATACAGTGTTACATTTTAATAAAACAGATACACGCTTGGCAAACAATGGAATCCCAGTTTATCTACAGAAACTGAGGTGTCGTGTCAATTTCCAGGCACTGAAATTCTCCCCTCAGATTGAGACACTGGGTTATAAGTTAATTCGTCTACTTCAAGAAAAGGGACCTATTGTGGTCTTGCATCTGAGATACGAGATGGATATGCTGGCCTTTTCAGGTTGTACACATGGCTGTACAAAGGAAGAAGCTGATGAGCTCAAACAGATGAGATATGCATTCCCTTGGTGGAGGGAGAAAGAGATCTTGTCTGACGAGAGGAGATCACAAGGTCTGTGTCCTCTGACCCCAGAGGAAGCAGCACTGACATTACAGGCCTTGGGTTTTAACAAGGAGACACAAATATATATTGCTGCCGGTGAGATTTATGGTAGTGAACGGAGACTTGCAACTCTTAGGGCAGCCTTCCCATTGATTGTGAAAAAGGAAGCATTGCTATCCCCAGAAGAATTGAAGCTATTCCGGAATCATTCGTCACAAATGGCAGCTTTAGATTTTATGGTATCTGTAGCCAGTAACACTTTCATTCCAACCTATGATGGTAACATGGCAAGACTTGTTGAAGGTCACCGGAGATACCTGGGGTTTAAGAGAACAATAACACTGGATAGAAAAAAGCTAGTGCAATTACTGGATATGCACCAGAATGGTACACTTTCTTGGGATGACTTCGCAGCTGCTGTAAGATTGGCGCATGAGAAAAGACAGGGTCAGCCAATGCAACGAATGGCAATTCCAGACAAGCCAAAGGAAGAAGATTACTTTTATGCAAATCCTCACGAATGCTTCTGTGAGGGAATGAACTGTGACGACTCACTAAGCCATAGTAACTCAAGTAAAGTACTTTAA 2958 44.42 MSFEHSGTAAGSPAPGSTGGKRNSSSSSASGTSKEKQKEKARVSRTSLILWHAHQNDSSAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRAKGYLPVLRDNVVFSGAMEVRSEGIQVRSDKLPAPVIPRTRLQVWFVRVCSSILLWTFLVQLVAFGKLWHPLFISNITNRISQVTGIPLSLHVEESIQSTPLLPARNYSSNGYLRVSCNGGLNQMRAAICDMVTVARLLNLTLVVPELDKTSFWADPSNFDDIFNVNHFIDSLRDEVRIVRRLPKKLNRKYGFTPFSMPPVSWSNEKYYLEQWSHWYSGHGLLSTFCCLYLNLVTPPAPPYWSENSFLFTLREIIQPYIDLLEDCYCTKHSPKSSGSIITHTILPLVKKHTVLHFNKTDTRLANNGIPVYLQKLRCRVNFQALKFSPQIETLGYKLIRLLQEKGPIVVLHLRYEMDMLAFSGCTHGCTKEEADELKQMRYAFPWWREKEILSDERRSQGLCPLTPEEAALTLQALGFNKETQIYIAAGEIYGSERRLATLRAAFPLIVKKEALLSPEELKLFRNHSSQMAALDFMVSVASNTFIPTYDGNMARLVEGHRRYLGFKRTITLDRKKLVQLLDMHQNGTLSWDDFAAAVRLAHEKRQGQPMQRMAIPDKPKEEDYFYANPHECFCEGMNCDDSLSHSNSSKVL 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3856559 3872873 + Lsi04G003910.1 Lsi04g00391 660440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00391 985 SMART ANK_2a 78 107 IPR002110 GO:0005515
Lsi04g00391 985 Gene3D - 18 143 IPR036770 -
Lsi04g00391 985 MobiDBLite consensus disorder prediction 1 32 - -
Lsi04g00391 985 Pfam Ankyrin repeats (3 copies) 45 109 IPR002110 GO:0005515
Lsi04g00391 985 CDD STKc_MAP3K-like 176 392 - -
Lsi04g00391 985 SMART serkin_6 170 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00391 985 Pfam GDP-fucose protein O-fucosyltransferase 508 897 IPR019378 -
Lsi04g00391 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Lsi04g00391 985 MobiDBLite consensus disorder prediction 1 43 - -
Lsi04g00391 985 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Lsi04g00391 985 Gene3D Phosphorylase Kinase; domain 1 155 248 - -
Lsi04g00391 985 ProSiteProfiles Protein kinase domain profile. 170 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00391 985 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Lsi04g00391 985 CDD O-FucT_plant 508 902 IPR024709 -
Lsi04g00391 985 ProSitePatterns Protein kinases ATP-binding region signature. 176 197 IPR017441 GO:0005524
Lsi04g00391 985 SUPERFAMILY Protein kinase-like (PK-like) 168 395 IPR011009 -
Lsi04g00391 985 Gene3D Transferase(Phosphotransferase) domain 1 249 408 - -
Lsi04g00391 985 PANTHER RHAMNOGALACTURONAN I RHAMNOSYLTRANSFERASE 1 674 982 - -
Lsi04g00391 985 PANTHER RHAMNOGALACTURONAN I RHAMNOSYLTRANSFERASE 1 430 615 - -
Lsi04g00391 985 Pfam Protein tyrosine and serine/threonine kinase 174 393 IPR001245 GO:0004672|GO:0006468
Lsi04g00391 985 PANTHER OS02G0726500 PROTEIN-RELATED 674 982 - -
Lsi04g00391 985 PANTHER OS02G0726500 PROTEIN-RELATED 430 615 - -
Lsi04g00391 985 SUPERFAMILY Ankyrin repeat 49 136 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00206 Lsi-Chr1:1936082 Lsi04g00391 Lsi-Chr4:3856559 2.14E-83 dispersed
Lsi02g00144 Lsi-Chr2:1180904 Lsi04g00391 Lsi-Chr4:3856559 3.24E-50 dispersed
Lsi02g00843 Lsi-Chr2:7891431 Lsi04g00391 Lsi-Chr4:3856559 4.42E-76 dispersed
Lsi03g00825 Lsi-Chr3:12720025 Lsi04g00391 Lsi-Chr4:3856559 7.69E-09 dispersed
Lsi04g00391 Lsi-Chr4:3856559 Lsi07g00964 Lsi-Chr7:12473752 2.26E-56 dispersed
Lsi10g01548 Lsi-Chr10:19887308 Lsi04g00391 Lsi-Chr4:3856559 4.15E-64 dispersed
Lsi04g00391 Lsi-Chr4:3856559 Lsi06g01385 Lsi-Chr6:24433157 5.41E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83557 PF10250 O-FucT 2.90E-69 CL0113 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00391 - K23280 csv:101215575 778.859