Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00392 TTTGGCAAACAATTTACTGCACAAATGGTTCCAGAATGGCAAGCAGCCTACATGGATTACGACTTTCTCAAATCCCTCTTGAAGCAAATTGACACTTTCAACAAAACCCACGCTAAAAACCACCCCACCACCCATTCCGGCCAGCTCCGCCGAACCCTCACTCTCTACAGGGCTTTCAGCGGCTTAACACTCCGCCACAGCCATAGTCACGGTTCGCCGCCGGATGCGGTGGAGGAGCAGGCGATATTAGTGAATGCGGTGAATCGGGACGGGACGAAGAAGTATCGGACGACGTTTTTGATGGCGGACGAGGAAGGAGGAGAGTATGAACTGGTGTATTTCAGGTCGTTGGATAGGGAATTCAATAAAGTAGACAAGTTTTATAAGTCCAAAGTGGAGGAAGTTGTGAAGGAAGCGAGTGTTTTGAATAAGCAAATGGATGCTTTGATTGCTTTCAGAATCAAAGTGGAGAATCCAGGGGGTGTTTGGGATTTCTCCGGCGACCGGCGGACGGAGGAGATTACAAGGCTGGCCACTGATATTGCTGTTTCAACTGCTGCTTTGTCATCTTCCACTCCTTCTGGTGTCAGAGCTAGCAGAAGGGTTCATATAGCGATGGATTCTATAGAAGAAGGGTCGAGCCACAATGAGCATAGTAGTCATAAACCAACAAACAATGAATCATCAAAAGATGATAATAAAGATGAAAATGGAGAGAAGAAATCAATGAGTGAAGATAATGAAGGGAAAGGAAGAAAAATGAAGGCCAACAGACCACCTCCACTTGAACTTCTTGATCGTGTAACAATGAATACAACTCTAGAGACCCCAAGATCCACCATTAAAGGCCTTCTCAATTTCCCCAAAAATTCAGAACTTCAATTCAACAAAGAAAATCTCAACAAAATTGAGAACCAACTCAAAAAGGCTTTTGTTGTGTTTTATCACAAGCTTAGGCTACTCAAGAGCTTCAGCTTCTTGAATACTTTGGCATTTTCAAAGATAATGAAGAAATATGATAAGATTACATCAAGAGATGCAGGAAAGTCATATATGAAGATGGTGGACAGCTCTTATCTTGGAAGTTCTGATGAGGTTTCCAAGTTAATGGAGAGGGTGGAAGCTGCATTTATCAAACACTTCTGCAATGCTAATCGCACCAAAGGAATGAACATTTTGAGACCCAAAGCAAAGAAAGAAAGACATAGAATTACATTTTCAGTTGGTTTCTTTGCTGGTTGCACCATAGCTCTTGTCGTCGCCCTCATTTTTATTACACGAGCCCGACATATAATAGACAGAGAAGGCAGCACCCAGTATATGGAAACCATGTTTCCTCTTTACAGCTTGTTTGGATTCGTTGTCTTGCACCTGCTAATGTATGCAGCAAACATATATTTTTGGAGGCGATATCAAGTGAATTATTCCTTCATATTTGGTTTCAAGCAAGGCACTGAATTGGCCTACCGAGAGGTTCTCCTTCCCAGTTTTGCTGTGGCAACTCTTGCTTTAGCCTGTGTTCTTTCTAATCTTGACATGGAGATGGACCCTGTAACGAAGTCATATCAAGCAGTGACTGAACTTCTCCCTTTGGTGTTGCTCCTTGTTGTGGTTGCAGTCTTCTTATGTCCACTCAACATCTTATATCGCTCGAGTCGCTTCTTCTGCATAAGAACTTTGTACCACTGCATATGTGCTCCTCTTTACACGGTCATCTTTCCCGATTTCTTCTTGGCAGATCAGTTAACCAGCCAGGTGCAAGCACTTCGTAGCTTGGAATTCTACATTTGCTATTACGGATGGGGAGATTACAAACATCGACAGAATACTTGTAGATCCAACACTGTATTCAACACTTTCAGCTTTATCATTGCTGTTATTCCATATTGGTCACGTCTCCTTCAGTGTCTCAGGCGACTGTATGAGGAGAAAGACGCAATGCAGGGATATAATGGAATCAAGTACTTCTTGACAATTGTAGCTGTTTGCTTAAGGACAGCTTATAATCTGAACAGGGGAATAGCCTGGAAAGTGCTAGCCGCAATTTTCTCGGCTGTTGCTGCCATTATATGCACATATTGGGACATCGCCGTCGACTGGGGCCTTCTGCAGCGACATTCGAAAAACCGATGGTTGAGAGACAAACTACTTGTTGGTCACAACAGTGTATACTATGTGGCAATGGTCTTGAATGTTTTACTGAGGTTTGCTTGGCTGCAAACTGTGTTGGATTTCCAGTTCTCCTTCCTGCATACACAAGGTTTGATTACAATAGTGGCCAGCCTTGAGATCATTCGTCGTGGCATATGGAATTTCTTCAGGTTGGAGAATGAGCATCTGAACAATGTTGGGAAGTATCGTGCATTTAAATCTGTACCGCTGCCTTTCAACTATGATGAAGATGATGACAAAGATGATTAA 2421 42.92 FGKQFTAQMVPEWQAAYMDYDFLKSLLKQIDTFNKTHAKNHPTTHSGQLRRTLTLYRAFSGLTLRHSHSHGSPPDAVEEQAILVNAVNRDGTKKYRTTFLMADEEGGEYELVYFRSLDREFNKVDKFYKSKVEEVVKEASVLNKQMDALIAFRIKVENPGGVWDFSGDRRTEEITRLATDIAVSTAALSSSTPSGVRASRRVHIAMDSIEEGSSHNEHSSHKPTNNESSKDDNKDENGEKKSMSEDNEGKGRKMKANRPPPLELLDRVTMNTTLETPRSTIKGLLNFPKNSELQFNKENLNKIENQLKKAFVVFYHKLRLLKSFSFLNTLAFSKIMKKYDKITSRDAGKSYMKMVDSSYLGSSDEVSKLMERVEAAFIKHFCNANRTKGMNILRPKAKKERHRITFSVGFFAGCTIALVVALIFITRARHIIDREGSTQYMETMFPLYSLFGFVVLHLLMYAANIYFWRRYQVNYSFIFGFKQGTELAYREVLLPSFAVATLALACVLSNLDMEMDPVTKSYQAVTELLPLVLLLVVVAVFLCPLNILYRSSRFFCIRTLYHCICAPLYTVIFPDFFLADQLTSQVQALRSLEFYICYYGWGDYKHRQNTCRSNTVFNTFSFIIAVIPYWSRLLQCLRRLYEEKDAMQGYNGIKYFLTIVAVCLRTAYNLNRGIAWKVLAAIFSAVAAIICTYWDIAVDWGLLQRHSKNRWLRDKLLVGHNSVYYVAMVLNVLLRFAWLQTVLDFQFSFLHTQGLITIVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEDDDKDD 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3881727 3887387 + Lsi04G003920.1 Lsi04g00392 660441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00392 806 MobiDBLite consensus disorder prediction 210 260 - -
Lsi04g00392 806 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 3 1 806 - -
Lsi04g00392 806 CDD SPX_PHO1_like 1 349 IPR034092 -
Lsi04g00392 806 Pfam EXS family 444 780 IPR004342 GO:0016021
Lsi04g00392 806 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 806 - -
Lsi04g00392 806 Pfam SPX domain 1 355 IPR004331 -
Lsi04g00392 806 MobiDBLite consensus disorder prediction 210 264 - -
Lsi04g00392 806 ProSiteProfiles SPX domain profile. 1 353 IPR004331 -
Lsi04g00392 806 ProSiteProfiles EXS domain profile. 612 806 IPR004342 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00392 - - - csv:101215812 1476.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01468 Lsi-Chr2:20395879 Lsi04g00392 Lsi-Chr4:3881727 0 dispersed
Lsi04g00392 Lsi-Chr4:3881727 Lsi04g00395 Lsi-Chr4:3891777 0 proximal
Lsi02g01768 Lsi-Chr2:23459691 Lsi04g00392 Lsi-Chr4:3881727 0 transposed
Lsi05g01749 Lsi-Chr5:24872208 Lsi04g00392 Lsi-Chr4:3881727 7.83E-142 transposed
Lsi02g01467 Lsi-Chr2:20363442 Lsi04g00392 Lsi-Chr4:3881727 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g964 . . . . . . . . . Cmo18g01150 . Cma18g01128 . Car18g01042 Sed06g1507 . . Bhi07g01530 Tan04g1051 Cmetu06g0752 Lac13g0343 Hepe10g1767 . . Cla05g02420 Cam05g2601 Cec05g2632 Cco05g2672 Clacu05g2602 Cmu05g2456 Cre05g2572 . . . . Lsi04g00392 . Chy10g01029 Cme10g00389 . . . . . . . . . . . . . . Car15g00256 Cpe13g00964 . . . . . . . . . . . . . . . . . Chy09g00228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00392 Lsi_Chr04 FPKM 17.692757 19.41618 19.56361 20.701305 18.944109 16.527681 18.895744 35.940792 32.80661 35.695873