Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00395 ATGAAGTTTGAGAATGAATTCAAGAAACATATGGTGCCTGAATGGACGGATGCTTATGTGGATTACAATGGCTTCAAAAGATTATTGCGTGAAATTTGCTGCGAGAAACAGATTAATAAGTCCAGAGGATCATTTGGGCGCTCAAAGAAGAAACCAACCGGCAAATGCAGTGAGTTAACCTCTCAGCCAAGAAAATGCCAAATCATGAAGGATATTGAGAATCAAGTTGGAGATATTGACAGATCACGGCAACATGACCACAGTCAACTTTCCAAGTCTTGTTCCCACAGGAAGTTCCAAGAAAAATCAGAGATTGAGATGACTTTTCTTAGAAAACTTGATGAAGAGCTCAACAAGGTCAATTCCTTCTACAAGGAGAATGTAGAGGCTGTAACCAAAGAAGCAACTGTTCTAAATAAACAAATGGAGACTTTGATTGCACTGCGAAGGAAGATGGAAATCTCCCCTCTGAATGAAAGACGCGATTCTCATGCTGAAGTTGCTACAATCCCCTTAAGCACCACTTTGCAAACGCCTTCTCCTTCAGATAATAAGAAACAGTTTGAAGACTTCAAAATGTTGATTCTGATTAAACATATTCAGCTTAAAATATTCATCAATTCACAATTTTTTATGCAATTTAAAGTAACTAAATACTTAGGAAGTGCACACTTGGATTCAGTGGTTGAAATGGATGCCAATGATCGGCGTGAACAAACAGAGTCTAATTGGGGTTCAGAACTGGATCAAGTTCATACAGAAGTAAGTAGCAATAAACATTTAGAGGAAGTCACAACGCTGGAAAACAACCAATATCCCCAAGAAATTCTTAAGCACGTGAAAGTTGTCGATGTGTTCAGCTCTCATAAATCTACAGCAAAATATATTTGCAAGAATTTTAAGGAGGATGATTTGGATGTTGATCAAGATGACCGTTGTAAGATTGAAGAACAGTTGAAAAAAGCATTTGCCGAATTTTACCAGAAGCTTCATTCGTTAAAGCAATATAGTTTTATGACCCTGTCAGCATTTGCGAGAATCATGAAAAAGTATGAGAAGGTTGCTGATCTCATGAAGATGGTGGAAATTACTTTCATCAAGAACTTTTCAAACTCAAATTATACAGAAGCCATGAAGCTTTTGAAGCCAAAAACTAAAAGAGAAAAACACAGCGTGACATTTTCTTCAGGCTTCCTATCTGGTTGTGCAGTGGCACTATTTGTGGCAACTGTTTTGAAAATAGCATCTCAAAAATTGATGGAGAGGGAAGATGGCACTCATTACATGGAAAACATATTTCCACTTTACAGTCTGTTTGGCTTTCTTGTCCTACACATGCTCATGTATGCAGCAGACTTATACTTCTGGAGACGTTGTCGAGTTAACTATCCATTTATCTTTGGTTCCAAGAGAGGAACTGAATTGGGTTGGCAAGAAGTTTTCCTGCTTGGTTCTGGTTTTGCAGTACTTGCATCGGCCAGCTTCCTGGCAAACTTATACTTGGACAGGGACCCCAGCACTCAAAAGTATAGAACAGAAGCTGAGAAGGTTCCTTTAGGCACAACAGCACTTATTCTCCTCATCACCTTTTGCCCATTCAACATTCTATACAAGTCAAGTCGTTTTTTCTTCATCCGCTGCATCCTACGCTGTATATCTGCTCCTCTGTGCAAGGTTAAGTTTCCAGATTATTTTTTAGCAGATCAGCTTACTAGTCAGGTACAAGCTTCACGATGTATTGTGCTGTATATTTGCTACTATGGTTTAGGAGAATACTCAAGGAGGCAAAACAAGTGCCACACACGTGGTGTCTACAACACTCTCTCCTTCATTATTGCTGTCATACCATTTTGGCTGCGGTTCTTACAGTGCATCCGTCGATTGCTTGAAGAAAAAGATTCGATGCATGGCTACAATGCTCTTAAATACCTCTCGACAATTGTTGCGGTCCTCATTAGGACTGCTTGTGAATTAAGAAAGGGAGATACCTGGATGGTGTTAGCCTTGATTAGTTCTGCAGTTGCTGTGTTGATGAATACATACTGGGACATTGTTGTTGACTGGGGACTTCTGCGAAAACACTCAAAGAACAAGTACTTGAGAGACCGGCTTTTAGTGTCCAAGAAGTCCGTCTATTTTGCAGCAATGTGCCATCTTGAACTAATCATTTACGCCTTTTGCCCTGTGACTTCTACTAATCCAATATTTCTGTGGGATTTTGAACAGATATTAAATATACTATTGAGAATTGCTTGGATCCAGTTGGTGCTAGCATTCAACTTGCGTTCATTTCAAAAGGTTGCTGCGACTACATTGATATCTTGCTTGGAAATCATTCGCCGTGGTCTTTGGAACTTCTTCAGTTTGGAGAATGAGCATCTGAACAACGTTAACAAGTATCGATCATTCAAGTCAGTTCCACTTCCATTCAGCTACTCCGACGATGATAATGAGAAGGATGATTGA 2466 39.5 MKFENEFKKHMVPEWTDAYVDYNGFKRLLREICCEKQINKSRGSFGRSKKKPTGKCSELTSQPRKCQIMKDIENQVGDIDRSRQHDHSQLSKSCSHRKFQEKSEIEMTFLRKLDEELNKVNSFYKENVEAVTKEATVLNKQMETLIALRRKMEISPLNERRDSHAEVATIPLSTTLQTPSPSDNKKQFEDFKMLILIKHIQLKIFINSQFFMQFKVTKYLGSAHLDSVVEMDANDRREQTESNWGSELDQVHTEVSSNKHLEEVTTLENNQYPQEILKHVKVVDVFSSHKSTAKYICKNFKEDDLDVDQDDRCKIEEQLKKAFAEFYQKLHSLKQYSFMTLSAFARIMKKYEKVADLMKMVEITFIKNFSNSNYTEAMKLLKPKTKREKHSVTFSSGFLSGCAVALFVATVLKIASQKLMEREDGTHYMENIFPLYSLFGFLVLHMLMYAADLYFWRRCRVNYPFIFGSKRGTELGWQEVFLLGSGFAVLASASFLANLYLDRDPSTQKYRTEAEKVPLGTTALILLITFCPFNILYKSSRFFFIRCILRCISAPLCKVKFPDYFLADQLTSQVQASRCIVLYICYYGLGEYSRRQNKCHTRGVYNTLSFIIAVIPFWLRFLQCIRRLLEEKDSMHGYNALKYLSTIVAVLIRTACELRKGDTWMVLALISSAVAVLMNTYWDIVVDWGLLRKHSKNKYLRDRLLVSKKSVYFAAMCHLELIIYAFCPVTSTNPIFLWDFEQILNILLRIAWIQLVLAFNLRSFQKVAATTLISCLEIIRRGLWNFFSLENEHLNNVNKYRSFKSVPLPFSYSDDDNEKDD 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3891777 3897878 - Lsi04G003950.1 Lsi04g00395 660444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00395 821 ProSiteProfiles SPX domain profile. 1 365 IPR004331 -
Lsi04g00395 821 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 10 743 821 - -
Lsi04g00395 821 Pfam SPX domain 1 357 IPR004331 -
Lsi04g00395 821 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 717 - -
Lsi04g00395 821 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 743 821 - -
Lsi04g00395 821 Pfam EXS family 433 794 IPR004342 GO:0016021
Lsi04g00395 821 ProSiteProfiles EXS domain profile. 600 820 IPR004342 GO:0016021
Lsi04g00395 821 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 10 1 717 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00395 - - - bhj:120081408 1305.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01768 Lsi-Chr2:23459691 Lsi04g00395 Lsi-Chr4:3891777 0 dispersed
Lsi04g00395 Lsi-Chr4:3891777 Lsi05g01749 Lsi-Chr5:24872208 1.09E-08 dispersed
Lsi04g00392 Lsi-Chr4:3881727 Lsi04g00395 Lsi-Chr4:3891777 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g962 . . . . . . . . . Cmo18g01153 . Cma18g01131 . Car18g01044 Sed07g1954 Cpe09g00196 . Bhi07g01532 Tan04g1053 Cmetu10g1096 Lac13g0340 Hepe10g1766 . . Cla05g02421 Cam05g2603 Cec05g2635 Cco05g2674 Clacu05g2604 Cmu05g2457 Cre05g2573 . . . . Lsi04g00395 . Chy10g01027 Cme10g00391 . . Bda07g01518 . . . . . . Cmo04g02908 . . . . Car15g00257 Cpe13g00962 . . . . . . . . . . . . . . . . . Chy09g00229 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00395 Lsi_Chr04 FPKM 16.561403 30.530161 21.544664 21.907942 15.252782 9.779172 14.22701 14.796592 14.391488 17.620859