Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00398 ATGACGAAAGCTTTTAGAAGACGAACTTCGTATTCAAGGCCTATAGATCGCCTCCGATTCCGGGCATCGGCAGACGGTGCTACGAAATCTGGATTCATCAGAGATATGAAGCTGAAGGAGATCTTGACTACTTTGCTTATAGGTCTTCCGTTGGTTGTTTTTGTTGTTTTGGTGCTTAGGAATCCAGCGGTGGATCTCTCTCTGGGTTTTGCCGAAGCCAGAGCATTGGGAAGAGTGGCCACTAATGGCGGTTCTGAGAGTTCAGGTTCAGAAAACGGTTTCTCTCAACTTTCCAATAGAGACAAACTTATTGGAGGTCTTCTCCTTCCTGGATTTGATGAAGGATCATGCTTGAGCAGATATCAATCCAGTTTATATCGAAGAGCTTCAACACACAAACCTTCTCCTTACCTCCTCTCGAAGCTTAGAGACTACGAAGCACTTCATCGACGGTGTGGTCCCCATACGAAACCATACGATGAAGCAGTAGAGCAACTCAGATCTGGCAGTAGTGTTAGTATGACAGAGTGTAAATATGTTGTGTGGATGTCTTATAGTGGCTTGGGAAACAAGATACTCACTTTGGCTTCTGCATTCCTCTATGCCCTCCTTACCAATCGTGTCTTGCTTGTTGATCCAGGGAAGGATATGGCTGATCTATTTTGTGAGCCCTTCCCAGAAAAATCTTGGTTGCTACCAAATGATTTCCCCTTGGTGGATCAATTCAGCAACTTTGATTCGAAATTTCCTAATTGTCATGGAAATATGCTTAAGATGAACACTCTAAACATGTCAATAGAATCAATCCCATCCTATCTATACCTACATTTGGTTCATGATTATGATGATCATGACAAGCTTTTCTTCTGTGATCAAGAACAGGCTCTTTTAGGCAAGATCCCTTGGCTATTACTCAAGACAGATAACTACTTTGTTCCATCTCTCTTCTTGATCCCATCTTTCGAACATGAACTGAGTAGCTTATTCCCCCAAAAAGACACCGTCTTCCATCATCTGGGCCGGTATCTTTTCCACCCATCGAATCATGTTTGGGGACTGATAACGAGATACTACGAAGCATATCTATCAAGTGCAGATGAAAGAATAGGAATTCAAGTAAGAGTGTTCGAGAGTGAACCGGGGCCATTCGATCATATAATGGATCAGATTTTAGGCTGTACTCTAAAGGAGAAGCTACTGCCTGAGGTAGACAAGGAAGGCTTCTCCTCCGTTCCTTTGGAACGCCCAAGAGTAAAAGCTGTTTTGATGACATCTTTAAGTTCTGGTTATTATGAAAAATTGAGAACCTTGTACTGGGAATACCCAACCACAACCGGAGAGGTCATCGCTGTTTATCAGCCGAGCTATGAAATGTATCAGCAGACAGAGAAGAAGACTCACAATAGGAAAGCATGGGCAGAAATGTACCTTCTGAGTTGGAGCGATGTATTGGTGACCAGTGCATGGTCAACATTCGGGTATGTGGCTCAAGGACTCAGCGGATCAAAACCATGGATTCTTTACAAGGCCGAGAACATGACCATGCCCGATCCACCGTGTCGTATGGCAATGTCAATGGAGCCTTGCTTTCATGCTCCTCCATTCTATGACTGCAAGGCAAAGAAAGGAATAGATACTGGTGAAGTTGTTCCCCATGTAAGACATTGTGAAGACATGAGCTGGGGGCTTAAGCTTGTTCACCATGAGGATTTATAA 1716 43.59 MTKAFRRRTSYSRPIDRLRFRASADGATKSGFIRDMKLKEILTTLLIGLPLVVFVVLVLRNPAVDLSLGFAEARALGRVATNGGSESSGSENGFSQLSNRDKLIGGLLLPGFDEGSCLSRYQSSLYRRASTHKPSPYLLSKLRDYEALHRRCGPHTKPYDEAVEQLRSGSSVSMTECKYVVWMSYSGLGNKILTLASAFLYALLTNRVLLVDPGKDMADLFCEPFPEKSWLLPNDFPLVDQFSNFDSKFPNCHGNMLKMNTLNMSIESIPSYLYLHLVHDYDDHDKLFFCDQEQALLGKIPWLLLKTDNYFVPSLFLIPSFEHELSSLFPQKDTVFHHLGRYLFHPSNHVWGLITRYYEAYLSSADERIGIQVRVFESEPGPFDHIMDQILGCTLKEKLLPEVDKEGFSSVPLERPRVKAVLMTSLSSGYYEKLRTLYWEYPTTTGEVIAVYQPSYEMYQQTEKKTHNRKAWAEMYLLSWSDVLVTSAWSTFGYVAQGLSGSKPWILYKAENMTMPDPPCRMAMSMEPCFHAPPFYDCKAKKGIDTGEVVPHVRHCEDMSWGLKLVHHEDL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3907188 3910207 + Lsi04G003980.1 Lsi04g00398 660447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00398 571 Gene3D - 174 225 - -
Lsi04g00398 571 Pfam Xyloglucan fucosyltransferase 98 539 IPR004938 GO:0008107|GO:0016020|GO:0042546
Lsi04g00398 571 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 6 570 - -
Lsi04g00398 571 PANTHER FUCOSYLTRANSFERASE 2-RELATED 6 570 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00398 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101216541 1051.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00398 Lsi-Chr4:3907188 Lsi07g00815 Lsi-Chr7:9089321 1.24E-177 dispersed
Lsi02g00086 Lsi-Chr2:722278 Lsi04g00398 Lsi-Chr4:3907188 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g00398 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 9.0e-158 553.9
Lsi02g00086 . 113 582 Xyloglucan Fucosyltransferase1 AT1G14080 54.5 6.3e-151 531.2
Lsi07g00815 . 56 502 Xyloglucan Fucosyltransferase1 AT1G14080 50.6 5.2e-129 458.4
Lsi04g00398 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.7 1.4e-163 573.2
Lsi02g00086 . 115 582 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-161 565.5
Lsi07g00815 . 56 505 Xyloglucan Fucosyltransferase1 AT1G14100 50.9 1.8e-134 476.5
Lsi04g00398 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.0e-136 483.8
Lsi02g00086 . 112 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.2 1.7e-131 466.5
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 7.3e-181 630.6
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT1G49710 56.8 1.5e-146 516.5
Lsi08g00608 . 985 1388 Xyloglucan Fucosyltransferase1 AT1G71990 64.0 2.5e-152 535.4
Lsi04g00398 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.0 9.5e-182 633.6
Lsi02g00086 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 7.8e-168 587.4
Lsi07g00815 . 55 511 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 3.8e-130 462.2
Lsi04g00398 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 1.4e-198 689.5
Lsi02g00086 . 115 581 Xyloglucan Fucosyltransferase1 AT2G03220 65.7 3.3e-187 651.7
Lsi07g00815 . 55 510 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 8.0e-141 497.7
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 2.2e-153 539.3
Lsi02g00086 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.1 2.4e-144 509.2
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.9 1.1e-147 520.4
Lsi02g00086 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.4 7.1e-139 491.1
Lsi04g00398 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.7 7.4e-152 534.3
Lsi02g00086 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-141 500.4
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT3G19280 61.0 5.6e-178 620.9
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT3G19280 55.5 3.4e-143 505.4
Lsi04g00398 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.0 9.5e-182 633.6
Lsi02g00086 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 7.8e-168 587.4
Lsi07g00815 . 55 511 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 3.8e-130 462.2
Lsi04g00398 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 1.4e-198 689.5
Lsi02g00086 . 115 581 Xyloglucan Fucosyltransferase1 AT2G03220 65.7 3.3e-187 651.7
Lsi07g00815 . 55 510 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 8.0e-141 497.7
Lsi04g00398 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.0 9.5e-182 633.6
Lsi02g00086 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 7.8e-168 587.4
Lsi07g00815 . 55 511 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 3.8e-130 462.2
Lsi04g00398 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.7 7.4e-152 534.3
Lsi02g00086 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-141 500.4
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.9 1.1e-147 520.4
Lsi02g00086 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.4 7.1e-139 491.1
Lsi04g00398 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 9.0e-158 553.9
Lsi02g00086 . 113 582 Xyloglucan Fucosyltransferase1 AT1G14080 54.5 6.3e-151 531.2
Lsi07g00815 . 56 502 Xyloglucan Fucosyltransferase1 AT1G14080 50.6 5.2e-129 458.4
Lsi04g00398 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.7 1.4e-163 573.2
Lsi02g00086 . 115 582 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-161 565.5
Lsi07g00815 . 56 505 Xyloglucan Fucosyltransferase1 AT1G14100 50.9 1.8e-134 476.5
Lsi04g00398 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.0e-136 483.8
Lsi02g00086 . 112 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.2 1.7e-131 466.5
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 2.2e-153 539.3
Lsi02g00086 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.1 2.4e-144 509.2
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT3G19280 61.0 5.6e-178 620.9
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT3G19280 55.5 3.4e-143 505.4
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 7.3e-181 630.6
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT1G49710 56.8 1.5e-146 516.5
Lsi08g00608 . 985 1388 Xyloglucan Fucosyltransferase1 AT1G71990 64.0 2.5e-152 535.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00398 Lsi_Chr04 FPKM 13.512605 15.568299 31.96063 34.057468 15.910349 18.530226 18.846838 21.272215 19.562433 19.345188