Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00398 ATGACGAAAGCTTTTAGAAGACGAACTTCGTATTCAAGGCCTATAGATCGCCTCCGATTCCGGGCATCGGCAGACGGTGCTACGAAATCTGGATTCATCAGAGATATGAAGCTGAAGGAGATCTTGACTACTTTGCTTATAGGTCTTCCGTTGGTTGTTTTTGTTGTTTTGGTGCTTAGGAATCCAGCGGTGGATCTCTCTCTGGGTTTTGCCGAAGCCAGAGCATTGGGAAGAGTGGCCACTAATGGCGGTTCTGAGAGTTCAGGTTCAGAAAACGGTTTCTCTCAACTTTCCAATAGAGACAAACTTATTGGAGGTCTTCTCCTTCCTGGATTTGATGAAGGATCATGCTTGAGCAGATATCAATCCAGTTTATATCGAAGAGCTTCAACACACAAACCTTCTCCTTACCTCCTCTCGAAGCTTAGAGACTACGAAGCACTTCATCGACGGTGTGGTCCCCATACGAAACCATACGATGAAGCAGTAGAGCAACTCAGATCTGGCAGTAGTGTTAGTATGACAGAGTGTAAATATGTTGTGTGGATGTCTTATAGTGGCTTGGGAAACAAGATACTCACTTTGGCTTCTGCATTCCTCTATGCCCTCCTTACCAATCGTGTCTTGCTTGTTGATCCAGGGAAGGATATGGCTGATCTATTTTGTGAGCCCTTCCCAGAAAAATCTTGGTTGCTACCAAATGATTTCCCCTTGGTGGATCAATTCAGCAACTTTGATTCGAAATTTCCTAATTGTCATGGAAATATGCTTAAGATGAACACTCTAAACATGTCAATAGAATCAATCCCATCCTATCTATACCTACATTTGGTTCATGATTATGATGATCATGACAAGCTTTTCTTCTGTGATCAAGAACAGGCTCTTTTAGGCAAGATCCCTTGGCTATTACTCAAGACAGATAACTACTTTGTTCCATCTCTCTTCTTGATCCCATCTTTCGAACATGAACTGAGTAGCTTATTCCCCCAAAAAGACACCGTCTTCCATCATCTGGGCCGGTATCTTTTCCACCCATCGAATCATGTTTGGGGACTGATAACGAGATACTACGAAGCATATCTATCAAGTGCAGATGAAAGAATAGGAATTCAAGTAAGAGTGTTCGAGAGTGAACCGGGGCCATTCGATCATATAATGGATCAGATTTTAGGCTGTACTCTAAAGGAGAAGCTACTGCCTGAGGTAGACAAGGAAGGCTTCTCCTCCGTTCCTTTGGAACGCCCAAGAGTAAAAGCTGTTTTGATGACATCTTTAAGTTCTGGTTATTATGAAAAATTGAGAACCTTGTACTGGGAATACCCAACCACAACCGGAGAGGTCATCGCTGTTTATCAGCCGAGCTATGAAATGTATCAGCAGACAGAGAAGAAGACTCACAATAGGAAAGCATGGGCAGAAATGTACCTTCTGAGTTGGAGCGATGTATTGGTGACCAGTGCATGGTCAACATTCGGGTATGTGGCTCAAGGACTCAGCGGATCAAAACCATGGATTCTTTACAAGGCCGAGAACATGACCATGCCCGATCCACCGTGTCGTATGGCAATGTCAATGGAGCCTTGCTTTCATGCTCCTCCATTCTATGACTGCAAGGCAAAGAAAGGAATAGATACTGGTGAAGTTGTTCCCCATGTAAGACATTGTGAAGACATGAGCTGGGGGCTTAAGCTTGTTCACCATGAGGATTTATAA 1716 43.59 MTKAFRRRTSYSRPIDRLRFRASADGATKSGFIRDMKLKEILTTLLIGLPLVVFVVLVLRNPAVDLSLGFAEARALGRVATNGGSESSGSENGFSQLSNRDKLIGGLLLPGFDEGSCLSRYQSSLYRRASTHKPSPYLLSKLRDYEALHRRCGPHTKPYDEAVEQLRSGSSVSMTECKYVVWMSYSGLGNKILTLASAFLYALLTNRVLLVDPGKDMADLFCEPFPEKSWLLPNDFPLVDQFSNFDSKFPNCHGNMLKMNTLNMSIESIPSYLYLHLVHDYDDHDKLFFCDQEQALLGKIPWLLLKTDNYFVPSLFLIPSFEHELSSLFPQKDTVFHHLGRYLFHPSNHVWGLITRYYEAYLSSADERIGIQVRVFESEPGPFDHIMDQILGCTLKEKLLPEVDKEGFSSVPLERPRVKAVLMTSLSSGYYEKLRTLYWEYPTTTGEVIAVYQPSYEMYQQTEKKTHNRKAWAEMYLLSWSDVLVTSAWSTFGYVAQGLSGSKPWILYKAENMTMPDPPCRMAMSMEPCFHAPPFYDCKAKKGIDTGEVVPHVRHCEDMSWGLKLVHHEDL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3907188 3910207 + Lsi04G003980.1 Lsi04g00398 660447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00398 571 Gene3D - 174 225 - -
Lsi04g00398 571 Pfam Xyloglucan fucosyltransferase 98 539 IPR004938 GO:0008107|GO:0016020|GO:0042546
Lsi04g00398 571 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 6 570 - -
Lsi04g00398 571 PANTHER FUCOSYLTRANSFERASE 2-RELATED 6 570 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00398 Lsi-Chr4:3907188 Lsi07g00815 Lsi-Chr7:9089321 1.24E-177 dispersed
Lsi02g00086 Lsi-Chr2:722278 Lsi04g00398 Lsi-Chr4:3907188 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00398 K13681 - csv:101216541 1051.97