Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00404 ATGATCCTTAACGCCTCTCCTCCAAGTTCAGCCATCTTCCCCAAAAGCAATGCTTCTCATCAAGTCAAACTTAGATCTTCATCATCATCATTCTACACCTGCGCTCACCAGAGCAGTCCAGAAGCGCCAACGGGAAGCAATCTAAAGACAGTGCCACCATTCCCACGTTTGTTTTGCCACAACCATTCTTGCCCATGCGGAAGAAGGCATTTCATTGAAGCAGCAGCAGCCACATCTCTGTTCCCTCTATGCCCTTCAATGGCTTCTTCTAATTCATCCTCCGATTATGCTGCTATGTTGAACAAAGTTCGTCCTCCTAAGCCAGATTGGTATGAGGATTTCTACGTGTCACTCCTGGCTAATGCCATGAAATCGTATGAAGCGGAGATTGCAGATTACAAGTCCCAGATGTTTGCCAATTTGAGAGGGAAGGCCCAGAAAGTTTTGGAGATTGGAATTGGTGCAGGTCCTAACCTTAAGTATTACGCTGGGGATGAAGGTATGGAGGTTTATGGTGTGGATCCAAATAAAAAAATGGAGAAATATGCTCGGGAAGCAGCACAGAATGCTGGTTTGCCACTTAAGAATTTTGAGTTTAAACAAGCGGTCGGTGAGGCTATACCATTACCTGATGCTTCTGTTGATGCTGTTGTTGGAACACTTGTCTTGTGTTCTGTGACGAATGTTGACATGACTCTAAAGGAGGTGAAGAGAGTTCTAAGACCTGGTGGACTATATATATTTGTTGAACATGTCGCTGCAAAAGAAGGAAGCATGCTTCGTTTTATGCAGGATGTGCTCGATCCTCTGCAGCAGATCGTTTTTGATGGATGTCACCTTACTCGAAGGACAGGATCGAATATAATAGAAGCAGGGTTTTCAAATGTTGATCTAAACATGGCTTCCTTCTCTAGTTTCGCCTTCATAAATCCTCAAGTTTATGGAGTTGCTTATAGATGA 960 43.85 MILNASPPSSAIFPKSNASHQVKLRSSSSSFYTCAHQSSPEAPTGSNLKTVPPFPRLFCHNHSCPCGRRHFIEAAAATSLFPLCPSMASSNSSSDYAAMLNKVRPPKPDWYEDFYVSLLANAMKSYEAEIADYKSQMFANLRGKAQKVLEIGIGAGPNLKYYAGDEGMEVYGVDPNKKMEKYAREAAQNAGLPLKNFEFKQAVGEAIPLPDASVDAVVGTLVLCSVTNVDMTLKEVKRVLRPGGLYIFVEHVAAKEGSMLRFMQDVLDPLQQIVFDGCHLTRRTGSNIIEAGFSNVDLNMASFSSFAFINPQVYGVAYR 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3941608 3946442 + Lsi04G004040.1 Lsi04g00404 660453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00404 319 Gene3D Vaccinia Virus protein VP39 114 309 IPR029063 -
Lsi04g00404 319 Coils Coil 116 136 - -
Lsi04g00404 319 PANTHER METHYLTRANSFERASE LIKE 7B 43 318 - -
Lsi04g00404 319 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 300 IPR029063 -
Lsi04g00404 319 Pfam Methyltransferase domain 149 248 IPR013216 GO:0008168
Lsi04g00404 319 CDD AdoMet_MTases 147 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00404 - - - csv:101216778 509.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00403 Lsi-Chr4:3937278 Lsi04g00404 Lsi-Chr4:3941608 4.09E-156 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g928 Blo01g00430 . Bda01g02150 . . . . . . Cmo18g01156 . Cma18g01136 . Car18g01048 Sed07g1943 . . Bhi07g01543 Tan04g1063 Cmetu10g0469 Lac13g0332 Hepe10g1758 . . . . . . . . . . . Cone6ag0575 . Lsi04g00404 Csa05g02470 Chy10g01018 Cme10g00401 . . . . . Bpe02g02337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009174 2 1 1 0 1 1 1 1 1 2 1 1 1 2 2 1 1 1 0 1 2 1 1 1 1 2 0 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00404 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0