Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00406 ATGGCTTCTGTCCTTATCTTTTTGGCAGGTTTTTATGCCATAGTTTCCTCTGTTGATGCTTATGCAGGTGGAGGCTGGACTGGGGCTCACGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTATATAGCCAAGGCTATGGAACAAACACTGCTGCTTTGAGTACGGCTTTATTCAACAATGGCTTGAGCTGTGGCTCTTGCTACGAGATTAGGTGCGCTAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCCTCCCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTTCAACACTTTGATCTCTCTCAACCTGTATTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTTGCTTACAGAAGGGTTCCCTGCAGGAGAAGAGGAGGCATAAGGTTCACCATCAACGGGCACTCCTACTTCAACCTGGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGCAACAGCTACCTCAATGGTCAAAGCCTTTCCTTTAAGGTAACCACCAGCGACGGCCGAACCGTCATCTCCAACAACGCTGTCCCAGCCGGCTGGTCCTTTGGACAGACTTACAGTGGTGCCCAATTCTGA 747 51.14 MASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3973635 3975704 + Lsi04G004060.1 Lsi04g00406 660455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00406 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Lsi04g00406 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Lsi04g00406 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Lsi04g00406 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Lsi04g00406 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Lsi04g00406 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Lsi04g00406 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Lsi04g00406 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Lsi04g00406 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Lsi04g00406 248 Gene3D - 13 152 IPR036908 -
Lsi04g00406 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Lsi04g00406 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Lsi04g00406 248 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664
Lsi04g00406 248 PANTHER EXPANSIN 7 248 - -
Lsi04g00406 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Lsi04g00406 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Lsi04g00406 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Lsi04g00406 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Lsi04g00406 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Lsi04g00406 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Lsi04g00406 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Lsi04g00406 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Lsi04g00406 248 Gene3D - 156 248 IPR036749 -
Lsi04g00406 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Lsi04g00406 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Lsi04g00406 248 SMART dpbb_1 61 146 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01353 Lsi-Chr2:18139244 Lsi04g00406 Lsi-Chr4:3973635 1.26E-126 dispersed
Lsi03g00266 Lsi-Chr3:3285863 Lsi04g00406 Lsi-Chr4:3973635 2.05E-141 dispersed
Lsi04g00406 Lsi-Chr4:3973635 Lsi10g01386 Lsi-Chr10:17970338 3.70E-126 dispersed
Lsi04g01024 Lsi-Chr4:11657775 Lsi04g00406 Lsi-Chr4:3973635 6.03E-75 dispersed
Lsi05g00714 Lsi-Chr5:9683404 Lsi04g00406 Lsi-Chr4:3973635 2.54E-81 transposed
Lsi08g01302 Lsi-Chr8:21385779 Lsi04g00406 Lsi-Chr4:3973635 2.19E-65 transposed
Lsi11g00969 Lsi-Chr11:15332481 Lsi04g00406 Lsi-Chr4:3973635 5.30E-152 transposed
Lsi02g01475 Lsi-Chr2:20497709 Lsi04g00406 Lsi-Chr4:3973635 9.05E-141 wgd
Lsi02g00081 Lsi-Chr2:694390 Lsi04g00406 Lsi-Chr4:3973635 2.69E-73 wgd
Lsi04g00406 Lsi-Chr4:3973635 Lsi06g01458 Lsi-Chr6:25126453 1.58E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00406 - - csv:101217956 509.22