Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00423 ATGAAGCCCTACTACTCAATTTTCATCTTCAAGCTTCTCCTTTTGCAATGTCTATCATCCCTTTGTCTTTCTCAGGACTTCGATTTCTTCTACTTTGTTCAGCAGTGGCCGGGAGCATATTGTGATACAAAGCAACAACGGTGTTGCTATCCTAAAACAGGAAGGCCTGCTGCAGATTTTGGGATTCATGGTCTTTGGCCTAATTACAATGATGGAACCTACCCATCCAACTGCGATCCCGACAGTCTTTTCGACCGAACTGAGATCTCAGAAGTATTAAGCAGCATGCAAAAACACTGGCCATCGTTAAGCTGTCCAAGCAGCAATGGGCTAAGATTTTGGTCACACGAATGGGAGAAGCATGGCACGTGCTCTGAATCTGAACTCGACCAGAAAGAATATTTTGAGGCAGCTATTAAACTCAAGGAGAAGGCCAATCTCCTTAAACTCCTTAATAATGCAGGTACCACGTAA 474 43.88 MKPYYSIFIFKLLLLQCLSSLCLSQDFDFFYFVQQWPGAYCDTKQQRCCYPKTGRPAADFGIHGLWPNYNDGTYPSNCDPDSLFDRTEISEVLSSMQKHWPSLSCPSSNGLRFWSHEWEKHGTCSESELDQKEYFEAAIKLKEKANLLKLLNNAGTT 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4053694 4055514 - Lsi04G004230.1 Lsi04g00423 660472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00423 157 Gene3D - 21 157 IPR036430 GO:0003723|GO:0033897
Lsi04g00423 157 PANTHER RIBONUCLEASE T2 6 155 IPR001568 GO:0003723|GO:0033897
Lsi04g00423 157 ProSitePatterns Ribonuclease T2 family histidine active site 2. 113 124 IPR033130 -
Lsi04g00423 157 PANTHER F7A19.32 PROTEIN 6 155 - -
Lsi04g00423 157 ProSitePatterns Ribonuclease T2 family histidine active site 1. 60 67 IPR018188 GO:0003723|GO:0033897
Lsi04g00423 157 Pfam Ribonuclease T2 family 27 155 IPR001568 GO:0003723|GO:0033897
Lsi04g00423 157 SUPERFAMILY Ribonuclease Rh-like 22 156 IPR036430 GO:0003723|GO:0033897
Lsi04g00423 157 CDD RNase_T2_euk 27 155 IPR033697 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00423 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] - csv:101218904 263.462
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00423 Lsi-Chr4:4053694 Lsi11g01063 Lsi-Chr11:18460401 1.60E-22 dispersed
Lsi04g00423 Lsi-Chr4:4053694 Lsi04g00424 Lsi-Chr4:4060312 2.55E-72 tandem
Lsi02g01481 Lsi-Chr2:20544887 Lsi04g00423 Lsi-Chr4:4053694 3.41E-21 wgd
Lsi03g01495 Lsi-Chr3:25964046 Lsi04g00423 Lsi-Chr4:4053694 2.58E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g920 . . . . . Bpe10g00875 . Bma15g00155 Cmo04g01738 . . . . . Sed06g0633 . Cpe01g01467 Bhi07g01564 Tan04g1076 Cmetu04g1025 Lac13g0321 Hepe10g1745 . . . . . . . . . . . . . Lsi04g00423 Csa05g02454 . Cme10g00413 . . . . . . . . . . . Cma04g01660 . Car04g01699 . Cpe13g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002941 1 2 0 1 2 1 2 1 1 1 1 2 3 1 2 3 2 3 3 2 1 2 1 2 2 2 2 3 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00423 Lsi_Chr04 FPKM 8.404654 9.070727 10.905574 11.794807 5.812671 5.832828 5.37314 9.868747 8.923796 9.086364