Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00426 ATGAGCGATCATCTCGTTCTGTATGTGGACCGATTAATTCGGCCGCCACCCGTTGATTCCGTCCCCAACCCAACGGAGGTTGTTCCTCTCTTGCCGATTGGTGGGGATTTGGAAAGCGACTCTGTGGGTTTAGCTTCTTCAACAACCTCCACTTCCAATGTTGATGAGAGGGCACAAGAAAATGCGGGTTTGGATGGAGAGGACGATTCATTGATTCAGACAGCGGAGTGTCGCATTTGTCAGGATGAGGATGTCATTAGGAAGCTGGAAACTCCATGTGCCTGTAGTGGCAGTCTTAAGTATGCTCATCGGAAGTGTATACAGCTTTGGTGCAATGAGAAAGGGGATATAATCTACGCATGTATATATGGAAACAATTCAGCTACTTCGAATCCTTACCAACCTGGTTATACAGCTCCACCACCGCCCCCTCGCATTGAAGAAACATCTATTGACATAGGGGGAGGGTGGACCATCACTGGCACCCCTTTGAATTTACACGATCCTCGCCTTTTGGCTATTGCAGAGGCTGAACATAATTTATTGGAAGCCGAGTATGATGAATATGCTGCTTCCGATGCCAGTGGAGCTGCATTTTGTCGAGCGGCTGCTCTTATTCTCATGATCCTACTTTTCTTACGTCATGCACTTGAAGTCACAGATCCTGATGGCGATGATTACTTGTCTGCTTTCTTCTCTATTTTCTTGCTTCGAGCAGCTGGTTTTCTCTTGCCCTGTTACATTATGGCTTGTGCAGTCAACATCTTGCAACGTCGACAACGACGACAGGAACGGGAGGCTGCAGCCTTGGGTGCAGCACAAGTTGCTTTTGTGCTACAATCAGGACGGCACAGGGGGCTGCAATTTGCAATAGCATCAGGACCTCAAATGACTCCCCACCAGGACACTGTTTAA 915 47.98 MSDHLVLYVDRLIRPPPVDSVPNPTEVVPLLPIGGDLESDSVGLASSTTSTSNVDERAQENAGLDGEDDSLIQTAECRICQDEDVIRKLETPCACSGSLKYAHRKCIQLWCNEKGDIIYACIYGNNSATSNPYQPGYTAPPPPPRIEETSIDIGGGWTITGTPLNLHDPRLLAIAEAEHNLLEAEYDEYAASDASGAAFCRAAALILMILLFLRHALEVTDPDGDDYLSAFFSIFLLRAAGFLLPCYIMACAVNILQRRQRRQEREAAALGAAQVAFVLQSGRHRGLQFAIASGPQMTPHQDTV 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4074080 4077678 + Lsi04G004260.1 Lsi04g00426 660475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00426 304 Pfam Protein of unknown function (DUF3675) 135 252 IPR022143 -
Lsi04g00426 304 Pfam RING-variant domain 77 114 IPR011016 GO:0008270
Lsi04g00426 304 ProSiteProfiles Zinc finger RING-CH-type profile. 69 131 IPR011016 GO:0008270
Lsi04g00426 304 SUPERFAMILY RING/U-box 74 121 - -
Lsi04g00426 304 MobiDBLite consensus disorder prediction 42 58 - -
Lsi04g00426 304 CDD RING_CH-C4HC3_MARCH 77 116 - -
Lsi04g00426 304 Coils Coil 172 192 - -
Lsi04g00426 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 131 IPR013083 -
Lsi04g00426 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 289 - -
Lsi04g00426 304 MobiDBLite consensus disorder prediction 42 65 - -
Lsi04g00426 304 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 289 IPR033275 -
Lsi04g00426 304 SMART ringv_2 76 125 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00426 - - - csv:101205076 476.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01109 Lsi-Chr3:21235701 Lsi04g00426 Lsi-Chr4:4074080 4.84E-17 transposed
Lsi05g00280 Lsi-Chr5:3666389 Lsi04g00426 Lsi-Chr4:4074080 2.99E-31 transposed
Lsi09g00655 Lsi-Chr9:7329366 Lsi04g00426 Lsi-Chr4:4074080 1.64E-44 transposed
Lsi11g00974 Lsi-Chr11:15672259 Lsi04g00426 Lsi-Chr4:4074080 1.11E-77 transposed
Lsi02g00075 Lsi-Chr2:647517 Lsi04g00426 Lsi-Chr4:4074080 1.27E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g916 Blo01g00426 . Bda01g02156 . . Bpe10g00871 Bma14g01644 Bma15g00158 Cmo04g01735 Cmo18g01172 . Cma18g01151 . Car18g01060 Sed08g1983 Cpe09g00179 Cpe01g01464 Bhi07g01568 Tan04g1080 Cmetu10g1577 Lac13g0318 Hepe10g1741 . . Cla05g02442 Cam05g2627 Cec05g2661 Cco05g2699 Clacu05g2631 Cmu05g2485 Cre05g2598 Cone13ag0955 Cone19ag0947 Cone6ag0584 Cone9ag0587 Lsi04g00426 Csa05g02449 Chy10g01000 Cme10g00416 Blo06g00906 Blo11g00773 Bda07g01520 . Bpe11g01642 Bpe02g02343 Bma01g00099 . . . . Cma04g01657 . Car04g01697 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00426 Lsi_Chr04 FPKM 6.560577 7.279409 7.482161 8.132733 16.811106 16.503315 19.331936 11.691818 10.803923 11.769744