Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00427 ATGGTCATCTCTTACAGAGAATGCCTTAAGAATCACGCCGCCACTGTCGGTGGCCACGCCCTTGACGGCTGCGGTGAGTTTATGCCCTCCGTTACCTCCACACCCACCGATCCCACTTCGCTAAATTGCGCCGCCTGTGGTTGCCATCGGAACTTTCACCGCCGTGAACCGGACGATCCTTGGCCCAACCGTCGTTATTACCCATATGGCCTCTGTGCACCGCCGTCGCCGAGGTCGAGTCCAATCAAATCGCAAAGCCCATCCTCGCCGATCCCTCTACCAATTTCGCATATCCCACCGCCAGTCCAGTTCTCTGGTTCCCACATGTTGGTGGCATTGAGCACCGGAGTGCCGGCGGAGGAGGAATTGAGGCGAAAACAGAGGAAGAGAAAGAGGACGAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTATTCTCAGAGAAAATTGGATGGAGAATTGGGAAAAGTGAGGAAAGGTTAGTGGAGGAATTCTGCAAAGAAATTGGGATCGGAAAGCGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGAAGAACAGAGAAAAACAGAGCTTCTCGGAGTAGTGAAGAAAATGGTGGAAATGACTCAAAACAGAGCACATAG 636 51.42 MVISYRECLKNHAATVGGHALDGCGEFMPSVTSTPTDPTSLNCAACGCHRNFHRREPDDPWPNRRYYPYGLCAPPSPRSSPIKSQSPSSPIPLPISHIPPPVQFSGSHMLVALSTGVPAEEELRRKQRKRKRTKFSGEQKEKMQLFSEKIGWRIGKSEERLVEEFCKEIGIGKRVLRVWMHNNKYMGGRTEKNRASRSSEENGGNDSKQST 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4081885 4082520 + Lsi04G004270.1 Lsi04g00427 660476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00427 211 MobiDBLite consensus disorder prediction 188 211 - -
Lsi04g00427 211 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 128 185 IPR006455 -
Lsi04g00427 211 MobiDBLite consensus disorder prediction 121 140 - -
Lsi04g00427 211 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Lsi04g00427 211 Gene3D - 117 188 - -
Lsi04g00427 211 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
Lsi04g00427 211 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 194 - -
Lsi04g00427 211 SUPERFAMILY Homeodomain-like 121 186 IPR009057 -
Lsi04g00427 211 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Lsi04g00427 211 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 3 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00427 - - - bhj:120081705 350.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00427 Lsi-Chr4:4081885 Lsi11g00101 Lsi-Chr11:1088377 5.29E-45 dispersed
Lsi02g01484 Lsi-Chr2:20585357 Lsi04g00427 Lsi-Chr4:4081885 1.54E-59 wgd
Lsi03g01478 Lsi-Chr3:25706181 Lsi04g00427 Lsi-Chr4:4081885 2.31E-60 wgd
Lsi04g00427 Lsi-Chr4:4081885 Lsi06g01468 Lsi-Chr6:25190290 5.76E-19 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013584 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25134 PF04770 ZF-HD_dimer 6.40E-29 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00427 Lsi_Chr04 FPKM 4.810954 5.247507 0.242417 0.671496 12.207096 11.239305 12.217131 0.137221 0.0 0.034296