Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00427 ATGGTCATCTCTTACAGAGAATGCCTTAAGAATCACGCCGCCACTGTCGGTGGCCACGCCCTTGACGGCTGCGGTGAGTTTATGCCCTCCGTTACCTCCACACCCACCGATCCCACTTCGCTAAATTGCGCCGCCTGTGGTTGCCATCGGAACTTTCACCGCCGTGAACCGGACGATCCTTGGCCCAACCGTCGTTATTACCCATATGGCCTCTGTGCACCGCCGTCGCCGAGGTCGAGTCCAATCAAATCGCAAAGCCCATCCTCGCCGATCCCTCTACCAATTTCGCATATCCCACCGCCAGTCCAGTTCTCTGGTTCCCACATGTTGGTGGCATTGAGCACCGGAGTGCCGGCGGAGGAGGAATTGAGGCGAAAACAGAGGAAGAGAAAGAGGACGAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTATTCTCAGAGAAAATTGGATGGAGAATTGGGAAAAGTGAGGAAAGGTTAGTGGAGGAATTCTGCAAAGAAATTGGGATCGGAAAGCGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGAAGAACAGAGAAAAACAGAGCTTCTCGGAGTAGTGAAGAAAATGGTGGAAATGACTCAAAACAGAGCACATAG 636 51.42 MVISYRECLKNHAATVGGHALDGCGEFMPSVTSTPTDPTSLNCAACGCHRNFHRREPDDPWPNRRYYPYGLCAPPSPRSSPIKSQSPSSPIPLPISHIPPPVQFSGSHMLVALSTGVPAEEELRRKQRKRKRTKFSGEQKEKMQLFSEKIGWRIGKSEERLVEEFCKEIGIGKRVLRVWMHNNKYMGGRTEKNRASRSSEENGGNDSKQST 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4081885 4082520 + Lsi04G004270.1 Lsi04g00427 660476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00427 211 MobiDBLite consensus disorder prediction 188 211 - -
Lsi04g00427 211 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 128 185 IPR006455 -
Lsi04g00427 211 MobiDBLite consensus disorder prediction 121 140 - -
Lsi04g00427 211 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Lsi04g00427 211 Gene3D - 117 188 - -
Lsi04g00427 211 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
Lsi04g00427 211 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 194 - -
Lsi04g00427 211 SUPERFAMILY Homeodomain-like 121 186 IPR009057 -
Lsi04g00427 211 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Lsi04g00427 211 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 3 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00427 Lsi-Chr4:4081885 Lsi11g00101 Lsi-Chr11:1088377 5.29E-45 dispersed
Lsi02g01484 Lsi-Chr2:20585357 Lsi04g00427 Lsi-Chr4:4081885 1.54E-59 wgd
Lsi03g01478 Lsi-Chr3:25706181 Lsi04g00427 Lsi-Chr4:4081885 2.31E-60 wgd
Lsi04g00427 Lsi-Chr4:4081885 Lsi06g01468 Lsi-Chr6:25190290 5.76E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25134 PF04770 ZF-HD_dimer 6.40E-29 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00427 - - bhj:120081705 350.517