Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00428 ATGGAAATGGATGGTGAAAACATGGGGAAAACGAGGAATTCTGTTTTATGCTCTGTTTCTGTGGAAACTATCTCGTCTTTTAAAATGGGAAATTATGATTTTACTTGTGGGAAGAAAGAACTTGACATGGATAATGTTGATTCTGATCTTTCTTACATGCAACCCACATCTTTGGCTAAAATTTCTAAGGGAAGAAATTCCGGTGGCTTGAAAAGTAGTGACGAAATTCTTGATGTTGACTCAAAAAATAATGCTTCCAATGTGTTTGATTCATTGCCTGAACCAGAAGTTCAAGTGCTTTGGGAAGATTGTCCTGTTCCATCTGATTCAGAATCAGCAGGGGACTCAACCAATGGCTCCCCAAAGATCAATCATGATCAGGTTGATGATTCGTCGTGCAAAGAGATCAAGGCTGAGGAAAACAAGCAACTCGACTCTCTCAATAATTTGGCTCAGAAAGAGGAAGAATCTGTCGACGTTTCACAGAAATCAACAGAAACAATTTTGCTGGGGAAGCGCTCCATTTTAAATTATGATCATCGATATGAGCTAAACTATCTACCAGATCATCAGGATATAGTACATCAGCTTGAAATGGAGCTGAAAAATTCAAGAACTGGAGGGCTTCCAACAATTTTTGAAGAGGAAACTGAAACAGCAGAAACAATTAGTGAAAAATTTAAGTATGAAGAAGTAATGGGAGAGATACAAAAGGTCTACAGGACTTATACAGAGAAAATGTGGAAGCTTGATGTCTTAAACAATCAGACTATGCATTCCATTGGTTTGCTGCAGCTGCAATATCCACTGCAATCAGTGTCGGCGCAGAACTCACATAACGCACCGCTATGGTTGGGAAAAGCTCGGAGGCTGGGAGCTGATCCAAGACTTGAATTCATAAGAGATTTACTTAGAGACATAGAACTGGTGTACGTAGGACAAGTTTGTCTTTCCTGGGAAATTCTGCAATGGCAGCTTAGGAAATCCATTGACCTGCAACGATATGACTCGCAAGGCAATCGTCATTATAATCAAGTTGCTAGTGAGTTCCAACTTTTTCAAGTTATGCTGAAAAGATTCATGGGGGAAGAAAGGTTTCAGGGCAACAGAGTTGAGAACTATGTCCAGAACCGCTGTGTATTTCGTTCTCTTCTGCTAGTTCCACCCATCAAAGATGATGGTTCTGCTGAAGCTGAAGGAAGAGAATGGGAAGATCATGAAGATGCCTTTTCCAGTGATTTTGTAACAGAAATCATAGAGAAATCAATGTGGGTTTTCTATGAATTTCTTCTTTCTGATAAAGATGATGTTAAAAGTATCCTGAAAATGAACAGAAAGTATCAGATTGAACTCCAAAATACAGAAAATCCACAGCTTTTGTTGGTCAACATACAAGCTCAGTTTCAGAAGGCAGAGAGAAAGCTGAAAGACCTTATGAGAGGCAGCAATAGATGTTCTGTAGAGAAGTTGGGAAAGCAAGAGGAAGCTGGACTGAGTTATTCATTAATACTTCTCATTGCTCAGGTTGACCTCAAATTGATTTCAAGAGTGCTGAGAATGACAAGATTGACTGTCAACCAATTATTATGGTGCAACCAAAAACTTGATCAACTTACATTTATAAACAGACAGGTCCTCTTGGAACCCTCGCTTCTGCTTTTTCCCTTTTAA 1671 39.26 MEMDGENMGKTRNSVLCSVSVETISSFKMGNYDFTCGKKELDMDNVDSDLSYMQPTSLAKISKGRNSGGLKSSDEILDVDSKNNASNVFDSLPEPEVQVLWEDCPVPSDSESAGDSTNGSPKINHDQVDDSSCKEIKAEENKQLDSLNNLAQKEEESVDVSQKSTETILLGKRSILNYDHRYELNYLPDHQDIVHQLEMELKNSRTGGLPTIFEEETETAETISEKFKYEEVMGEIQKVYRTYTEKMWKLDVLNNQTMHSIGLLQLQYPLQSVSAQNSHNAPLWLGKARRLGADPRLEFIRDLLRDIELVYVGQVCLSWEILQWQLRKSIDLQRYDSQGNRHYNQVASEFQLFQVMLKRFMGEERFQGNRVENYVQNRCVFRSLLLVPPIKDDGSAEAEGREWEDHEDAFSSDFVTEIIEKSMWVFYEFLLSDKDDVKSILKMNRKYQIELQNTENPQLLLVNIQAQFQKAERKLKDLMRGSNRCSVEKLGKQEEAGLSYSLILLIAQVDLKLISRVLRMTRLTVNQLLWCNQKLDQLTFINRQVLLEPSLLLFPF 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4087934 4090323 + Lsi04G004280.1 Lsi04g00428 660477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00428 556 Coils Coil 461 481 - -
Lsi04g00428 556 Pfam Protein of unknown function (DUF1666) 305 555 IPR012870 -
Lsi04g00428 556 PANTHER OS09G0413600 PROTEIN 64 555 - -
Lsi04g00428 556 MobiDBLite consensus disorder prediction 110 126 - -
Lsi04g00428 556 Coils Coil 136 157 - -
Lsi04g00428 556 PANTHER FINGER FYVE DOMAIN PROTEIN, PUTATIVE (DUF1666)-RELATED 64 555 - -
Lsi04g00428 556 MobiDBLite consensus disorder prediction 104 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00428 - - - csv:105435571 870.152
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02827 Lsi-Chr2:34482084 Lsi04g00428 Lsi-Chr4:4087934 1.36E-29 transposed
Lsi11g00164 Lsi-Chr11:1761142 Lsi04g00428 Lsi-Chr4:4087934 4.01E-89 transposed
Lsi02g01489 Lsi-Chr2:20626689 Lsi04g00428 Lsi-Chr4:4087934 1.28E-24 wgd
Lsi03g01476 Lsi-Chr3:25637099 Lsi04g00428 Lsi-Chr4:4087934 3.55E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g912 . Blo16g01116 Bda01g02158 Bda11g01216 Bpe13g01411 . . . . Cmo18g01175 . Cma18g01153 . Car18g01062 Sed08g1991 Cpe09g00177 . Bhi07g01570 Tan04g1083 Cmetu04g0016 Lac13g0316 Hepe10g1739 . . Cla05g02444 Cam05g2629 Cec05g2663 Cco05g2701 Clacu05g2633 Cmu05g2487 Cre05g2600 Cone13ag0956 . . . Lsi04g00428 Csa05g02447 Chy10g00998 Cme10g00418 . . . Bda11g01216 . . Bma01g00097 Bma06g00685 . Cmo04g02892 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008879 2 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00428 Lsi_Chr04 FPKM 11.370635 12.531821 0.734696 0.46596 12.674278 13.786475 13.082996 0.098313 0.0 0.0